Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p45220 Brassica napus HOM05D001271 ORTHO05D001115 4.1e-47 191.0 95 100.0
AL7G21070 Arabidopsis lyrata HOM05D000737 ORTHO05D000581 5.0e-13 77.8 45 86.7
AT4G30996 Arabidopsis thaliana HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
BcaB03g12672 Brassica carinata HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
BcaNung01549 Brassica carinata HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
BcaNung03422 Brassica carinata HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
A08p18920 Brassica napus HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
BraA08t33855Z Brassica rapa HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
Carub.0007s0952 Capsella rubella HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
CARHR238920 Cardamine hirsuta HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
Sp7g28890 Schrenkiella parvula HOM05D001271 ORTHO05D001115 5.0e-13 77.8 45 86.7
Aa31LG2G19300 Aethionema arabicum HOM05D001271 ORTHO05D001115 1.1e-12 76.6 45 84.4
BcaC01g01119 Brassica carinata HOM05D001271 ORTHO05D001115 1.1e-12 76.6 45 84.4
C03p88330 Brassica napus HOM05D001271 ORTHO05D001115 1.1e-12 76.6 45 84.4
BolC3t21143H Brassica oleracea HOM05D001271 ORTHO05D001115 1.1e-12 76.6 45 84.4
CARHR117810 Cardamine hirsuta HOM05D001271 ORTHO05D001115 1.1e-12 76.6 78 55.1
BcaC09g51889 Brassica carinata HOM05D000306 ORTHO05D000410 1.9e-12 75.9 45 84.4
A01p07160 Brassica napus HOM05D001271 ORTHO05D001115 1.9e-12 75.9 45 84.4
C01p07920 Brassica napus HOM05D001271 ORTHO05D001115 1.9e-12 75.9 45 84.4
BolC1t00779H Brassica oleracea HOM05D001271 ORTHO05D001115 1.9e-12 75.9 45 84.4
BraA01t00668Z Brassica rapa HOM05D001271 ORTHO05D001115 1.9e-12 75.9 45 84.4
AT2G24290 Arabidopsis thaliana HOM05D001271 ORTHO05D001115 2.5e-12 75.5 45 84.4
THA.LOC104819912 Tarenaya hassleriana HOM05D001271 ORTHO05D001115 2.5e-12 75.5 45 82.2
AL4G14640 Arabidopsis lyrata HOM05D001271 ORTHO05D001115 3.2e-12 75.1 45 84.4
A03p60510 Brassica napus HOM05D001271 ORTHO05D001115 3.2e-12 75.1 45 82.2
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 3.2e-12 75.1 45 82.2
Cpa.g.sc46.119 Carica papaya HOM05D001271 ORTHO05D001115 3.2e-12 75.1 45 82.2
Thhalv10026395m.g Eutrema salsugineum HOM05D001271 ORTHO05D001115 3.2e-12 75.1 45 84.4
C07p58380 Brassica napus HOM05D001271 ORTHO05D001115 4.2e-12 74.7 45 82.2
BolC7t46292H Brassica oleracea HOM05D001271 ORTHO05D001115 4.2e-12 74.7 45 82.2
Lalb_Chr08g0233941 Lupinus albus HOM05D001271 ORTHO05D001115 5.5e-12 74.3 45 80.0
CANSAT11G2549 Cannabis sativa HOM05D001271 ORTHO05D001115 7.2e-12 73.9 45 80.0
Carub.0004s0362 Capsella rubella HOM05D001271 ORTHO05D001115 7.2e-12 73.9 45 82.2
Duzib150G0294 Durio zibethinus HOM05D001271 ORTHO05D001115 9.5e-12 73.6 45 80.0
Thhalv10000399m.g Eutrema salsugineum HOM05D001271 ORTHO05D001115 9.5e-12 73.6 45 80.0
arahy.Tifrunner.gnm1.ann1.LVI61E Arachis hypogaea HOM05D001271 ORTHO05D001115 1.2e-11 73.2 45 77.8
arahy.Tifrunner.gnm1.ann1.ZMB1P7 Arachis hypogaea HOM05D001271 ORTHO05D001115 1.2e-11 73.2 45 77.8
TWI34G1980 Tripterygium wilfordii HOM05D001271 ORTHO05D001115 1.2e-11 73.2 45 77.8
Haze_19241 Corylus avellana HOM05D001271 ORTHO05D001115 1.6e-11 72.8 45 80.0
MD02G1010700 Malus domestica HOM05D001271 ORTHO05D001115 2.1e-11 72.4 45 80.0
Prupe.7G259500 Prunus persica HOM05D001271 ORTHO05D001115 2.1e-11 72.4 45 80.0
THA.LOC104803895 Tarenaya hassleriana HOM05D001271 ORTHO05D001115 2.1e-11 72.4 44 79.5
Gohir.D08G272900 Gossypium hirsutum HOM05D001271 ORTHO05D001115 2.8e-11 72.0 45 77.8
Gorai.004G291300 Gossypium raimondii HOM05D001271 ORTHO05D001115 2.8e-11 72.0 45 77.8
Lalb_Chr11g0072751 Lupinus albus HOM05D001271 ORTHO05D001115 2.8e-11 72.0 45 77.8
MD15G1155600 Malus domestica HOM05D001271 ORTHO05D001115 2.8e-11 72.0 45 80.0
Sabra06G0143500 Salix brachista HOM05D003310 ORTHO05D003911 2.8e-11 72.0 45 77.8
Gohir.A05G051000 Gossypium hirsutum HOM05D001271 ORTHO05D001115 3.6e-11 71.6 45 75.6
Manes.14G141600 Manihot esculenta HOM05D001271 ORTHO05D001115 3.6e-11 71.6 45 77.8
Potri.018G111100 Populus trichocarpa HOM05D001271 ORTHO05D001115 3.6e-11 71.6 45 77.8
Atru.chr7.167 Acer truncatum HOM05D001271 ORTHO05D001115 4.7e-11 71.2 45 80.0
Ciclev10010826m.g Citrus clementina HOM05D001271 ORTHO05D001115 4.7e-11 71.2 45 77.8
TWI63G0913 Tripterygium wilfordii HOM05D001271 ORTHO05D001115 4.7e-11 71.2 45 75.6
Gohir.A07G025700 Gossypium hirsutum HOM05D001271 ORTHO05D001115 6.1e-11 70.9 45 75.6
Gohir.D07G029500 Gossypium hirsutum HOM05D001271 ORTHO05D001115 6.1e-11 70.9 45 75.6
Gorai.001G030700 Gossypium raimondii HOM05D001271 ORTHO05D001115 6.1e-11 70.9 45 75.6
Lj6g0024799 Lotus japonicus HOM05D001271 ORTHO05D001115 6.1e-11 70.9 45 75.6
Ca_03814_v3 Cicer arietinum L. HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 73.3
Eucgr.C00379 Eucalyptus grandis HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 77.8
Medtr2g450100 Medicago truncatula HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 73.3
Psat1g022280 Pisum sativum HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 73.3
PGR142G2195 Punica granatum HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 77.8
Sabra18G0093700 Salix brachista HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 75.6
TPR.G35881 Trifolium pratense HOM05D001271 ORTHO05D001115 8.0e-11 70.5 45 73.3
Gohir.A08G251400 Gossypium hirsutum HOM05D001271 ORTHO05D001115 1.0e-10 70.1 45 75.6
Potri.006G187800 Populus trichocarpa HOM05D001271 ORTHO05D001115 1.0e-10 70.1 45 75.6
RcHm_v2.0_Chr2g0086111 Rosa chinensis HOM05D001271 ORTHO05D001115 1.0e-10 70.1 45 77.8
GSVIVG01002816001 Vitis vinifera HOM05D001271 ORTHO05D001115 1.0e-10 70.1 45 77.8
GSVIVG01003726001 Vitis vinifera HOM05D001271 ORTHO05D001115 1.0e-10 70.1 45 77.8
Duzib168G1628 Durio zibethinus HOM05D001271 ORTHO05D001115 1.4e-10 69.7 45 75.6
FvH4_1g01280 Fragaria vesca HOM05D001271 ORTHO05D001115 1.4e-10 69.7 45 77.8
FAN19G1074 Fragaria x ananassa HOM05D001271 ORTHO05D001115 1.4e-10 69.7 45 77.8
FAN23G0901 Fragaria x ananassa HOM05D001271 ORTHO05D001115 1.4e-10 69.7 45 77.8
FAN26G1061 Fragaria x ananassa HOM05D001271 ORTHO05D001115 1.4e-10 69.7 45 77.8
FAN28G0468 Fragaria x ananassa HOM05D001271 ORTHO05D001115 1.4e-10 69.7 45 77.8
COL.COLO4_18769 Corchorus olitorius HOM05D001271 ORTHO05D001115 1.8e-10 69.3 45 75.6
Duzib187G0314 Durio zibethinus HOM05D001271 ORTHO05D001115 2.3e-10 68.9 45 75.6
Manes.06G038200 Manihot esculenta HOM05D001271 ORTHO05D001115 3.0e-10 68.6 45 73.3
Aqoxy7G02780 Aquilegia oxysepala HOM05D001271 ORTHO05D001115 4.0e-10 68.2 45 73.3
ClCG11G003550 Citrullus lanatus HOM05D001271 ORTHO05D001115 4.0e-10 68.2 45 73.3
MELO3C004488.2 Cucumis melo HOM05D001271 ORTHO05D001115 4.0e-10 68.2 45 73.3
CsaV3_2G003420 Cucumis sativus L. HOM05D001271 ORTHO05D001115 4.0e-10 68.2 45 73.3
CiPaw.15G173500 Carya illinoinensis HOM05D001271 ORTHO05D001115 5.2e-10 67.8 45 73.3
Glyma.09G098800 Glycine max HOM05D001271 ORTHO05D001115 6.8e-10 67.4 45 71.1
Glyma.15G206000 Glycine max HOM05D001271 ORTHO05D001115 6.8e-10 67.4 45 71.1
Gohir.D05G052550 Gossypium hirsutum HOM05D001271 ORTHO05D001115 6.8e-10 67.4 45 73.3
Gorai.009G054300 Gossypium raimondii HOM05D001271 ORTHO05D001115 6.8e-10 67.4 45 73.3
Thecc.09G034600 Theobroma cacao HOM05D001271 ORTHO05D001115 6.8e-10 67.4 45 73.3
TAR636G2133 Trochodendron aralioides HOM05D001271 ORTHO05D001115 6.8e-10 67.4 45 75.6
MSTRG.6103 Avicennia marina HOM05D001271 ORTHO05D001115 8.8e-10 67.0 45 68.9
Sed0010935 Sechium edule HOM05D001271 ORTHO05D001115 8.8e-10 67.0 45 71.1
QL02p092509 Quercus lobata HOM05D001271 ORTHO05D001115 1.2e-09 66.6 45 73.3
SGA_v2.0_scaffold45G17053 Striga asiatica HOM05D001271 ORTHO05D001115 1.2e-09 66.6 45 71.1
TAR625G1244 Trochodendron aralioides HOM05D001271 ORTHO05D001115 1.2e-09 66.6 45 68.9
CiPaw.16G115400 Carya illinoinensis HOM05D001271 ORTHO05D001115 1.5e-09 66.2 45 71.1
ECA234G3423 Erigeron canadensis HOM05D000737 ORTHO05D000581 1.5e-09 66.2 45 68.9
Hma1.2p1_0109F.1_g052390 Hydrangea macrophylla HOM05D001271 ORTHO05D001115 1.5e-09 66.2 45 71.1
VMungo1309G1528 Vigna mungo HOM05D001271 ORTHO05D001115 1.5e-09 66.2 45 68.9
CSS0034989 Camellia sinensis var. sinensis HOM05D001271 ORTHO05D001115 2.0e-09 65.9 45 68.9
Cc06_g15360 Coffea canephora HOM05D001271 ORTHO05D001115 2.0e-09 65.9 45 68.9
HanXRQChr12g0357291 Helianthus annuus HOM05D001271 ORTHO05D001115 2.0e-09 65.9 45 68.9
Hma1.2p1_0028F.1_g017310 Hydrangea macrophylla HOM05D001271 ORTHO05D001115 2.0e-09 65.9 45 71.1
CDE05G1025 Ceratophyllum demersum HOM05D001271 ORTHO05D001115 2.6e-09 65.5 45 68.9
MBI15_g09159_MAGBIO Magnolia biondii HOM05D001271 ORTHO05D001115 2.6e-09 65.5 45 68.9
ECA236G0455 Erigeron canadensis HOM05D001271 ORTHO05D001115 3.4e-09 65.1 45 68.9
HanXRQChr10g0314601 Helianthus annuus HOM05D001271 ORTHO05D001115 3.4e-09 65.1 45 66.7
Phvul.009G193900 Phaseolus vulgaris HOM05D001271 ORTHO05D001115 3.4e-09 65.1 45 68.9
Sed0019175 Sechium edule HOM05D001271 ORTHO05D001115 3.4e-09 65.1 45 71.1
Lsat_1_v5_gn_5_91381 Lactuca sativa HOM05D001271 ORTHO05D001115 4.4e-09 64.7 45 66.7
SGA_v2.0_scaffold229G43364 Striga asiatica HOM05D001271 ORTHO05D001115 4.4e-09 64.7 45 66.7
Oeu043490.1 Olea europaea HOM05D001271 ORTHO05D001115 9.8e-09 63.5 45 64.4
PSO384G0808 Papaver somniferum HOM05D001271 ORTHO05D001115 9.8e-09 63.5 45 71.1
PSO384G2663 Papaver somniferum HOM05D001271 ORTHO05D001115 9.8e-09 63.5 45 71.1
PSO676G0004 Papaver somniferum HOM05D001271 ORTHO05D001115 9.8e-09 63.5 45 71.1
Lsat_1_v5_gn_8_61181 Lactuca sativa HOM05D001271 ORTHO05D001115 1.3e-08 63.2 45 68.9
Oeu026543.2 Olea europaea HOM05D001271 ORTHO05D001115 1.3e-08 63.2 45 66.7
Zm00001eb425990 Zea mays HOM05D001271 ORTHO05D001115 1.3e-08 63.2 45 68.9
ATR1153G089 Amborella trichopoda HOM05D001271 ORTHO05D001115 1.7e-08 62.8 45 68.9
Nn4g26425 Nelumbo nucifera HOM05D001271 ORTHO05D001115 1.7e-08 62.8 45 62.2
Os04g0501800 Oryza sativa ssp. japonica HOM05D001271 ORTHO05D001115 1.7e-08 62.8 45 68.9
Ah.14g078160 Amaranthus hybridus HOM05D001271 ORTHO05D001115 2.2e-08 62.4 45 68.9
CSS0009857 Camellia sinensis var. sinensis HOM05D001271 ORTHO05D001115 2.2e-08 62.4 45 64.4
CSS0011442 Camellia sinensis var. sinensis HOM05D001271 ORTHO05D001115 2.2e-08 62.4 45 64.4
Migut.J01316 Erythranthe guttata HOM05D001271 ORTHO05D001115 2.2e-08 62.4 45 64.4
HanXRQChr05g0137791 Helianthus annuus HOM05D001271 ORTHO05D001115 2.2e-08 62.4 45 66.7
Oeu028812.1 Olea europaea HOM05D001271 ORTHO05D001115 2.2e-08 62.4 45 64.4
Dinv23298 Davidia involucrata HOM05D001271 ORTHO05D001115 2.8e-08 62.0 45 66.7
Dinv42890 Davidia involucrata HOM05D001271 ORTHO05D001115 2.8e-08 62.0 45 66.7
Lj9A495G53 Lonicera japonica HOM05D001271 ORTHO05D001115 2.8e-08 62.0 45 68.9
AUR62011269 Chenopodium quinoa HOM05D001271 ORTHO05D001115 3.7e-08 61.6 44 68.2
AUR62042024 Chenopodium quinoa HOM05D001271 ORTHO05D001115 3.7e-08 61.6 44 68.2
unitig_60.g25523 Utricularia gibba HOM05D003204 ORTHO05D003566 3.7e-08 61.6 45 64.4
MSTRG.26299 Avicennia marina HOM05D001271 ORTHO05D001115 4.9e-08 61.2 45 66.7
Sc08g0005010 Simmondsia chinensis HOM05D001271 ORTHO05D001115 4.9e-08 61.2 45 68.9
Actinidia38686 Actinidia chinensis HOM05D001271 ORTHO05D001115 6.3e-08 60.8 45 62.2
EL10Ac8g18843 Beta vulgaris HOM05D001271 ORTHO05D001115 6.3e-08 60.8 44 68.2
Nitab4.5_0001094g0100 Nicotiana tabacum HOM05D001271 ORTHO05D001115 6.3e-08 60.8 45 64.4
Nitab4.5_0005407g0010 Nicotiana tabacum HOM05D001271 ORTHO05D001115 6.3e-08 60.8 45 64.4
Hund21624 Selenicereus undatus HOM05D001271 ORTHO05D001115 6.3e-08 60.8 45 64.4
Solyc07g005180.3 Solanum lycopersicum HOM05D001271 ORTHO05D001115 6.3e-08 60.8 45 62.2
Sopen07g001590 Solanum pennellii HOM05D001271 ORTHO05D001115 6.3e-08 60.8 45 62.2
DCAR_016297 Daucus carota HOM05D001271 ORTHO05D001115 1.1e-07 60.1 45 62.2
Migut.K00346 Erythranthe guttata HOM05D001271 ORTHO05D001115 1.1e-07 60.1 45 62.2
SalBow1G4776 Salvia bowleyana HOM05D001271 ORTHO05D001115 1.1e-07 60.1 45 64.4
PGSC0003DMG400003189 Solanum tuberosum HOM05D001271 ORTHO05D001115 1.4e-07 59.7 45 62.2
unitig_0.g515 Utricularia gibba HOM05D003204 ORTHO05D003566 1.4e-07 59.7 45 60.0
CAN.G520.18 Capsicum annuum HOM05D001271 ORTHO05D001115 1.8e-07 59.3 45 62.2
EL10Ac9g22222 Beta vulgaris HOM05D001271 ORTHO05D001115 2.4e-07 58.9 45 64.4
AUR62026988 Chenopodium quinoa HOM05D001271 ORTHO05D000009 2.4e-07 58.9 45 64.4
AUR62030828 Chenopodium quinoa HOM05D001271 ORTHO05D001115 2.4e-07 58.9 45 64.4
MBI14_g40712_MAGBIO Magnolia biondii HOM05D001271 ORTHO05D001115 3.1e-07 58.5 45 60.0
Aqoxy7G03474 Aquilegia oxysepala HOM05D001271 ORTHO05D001115 5.4e-07 57.8 45 62.2
RhsimUnG0234500 Rhododendron simsii HOM05D001271 ORTHO05D001115 7.0e-07 57.4 45 57.8
vmacro06097 Vaccinium macrocarpon HOM05D001271 ORTHO05D001115 7.0e-07 57.4 45 57.8
Peaxi162Scf00347g00623 Petunia axillaris HOM05D001271 ORTHO05D001115 1.6e-06 56.2 45 60.0
ATR0626G342 Amborella trichopoda HOM05D001271 ORTHO05D001115 2.0e-06 55.8 45 60.0
FvH4_6g42750 Fragaria vesca HOM05D001271 ORTHO05D001115 5.9e-06 54.3 44 61.4
FAN02G1558 Fragaria x ananassa HOM05D001271 ORTHO05D001115 5.9e-06 54.3 44 61.4
FAN05G3421 Fragaria x ananassa HOM05D001271 ORTHO05D001115 5.9e-06 54.3 44 61.4
FAN09G4738 Fragaria x ananassa HOM05D001271 ORTHO05D001115 5.9e-06 54.3 44 61.4
FAN14G5969 Fragaria x ananassa HOM05D001271 ORTHO05D001115 5.9e-06 54.3 44 61.4
HanXRQChr06g0180601 Helianthus annuus HOM05D001271 ORTHO05D001115 5.9e-06 54.3 45 57.8
RcHm_v2.0_Chr2g0158641 Rosa chinensis HOM05D001271 ORTHO05D001115 5.9e-06 54.3 44 61.4
ATR0681G295 Amborella trichopoda HOM05D001271 ORTHO05D001115 7.8e-06 53.9 45 57.8


User provided reference genes

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