Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1858.2 951 100.0
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1858.2 951 100.0
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1855.5 951 99.8
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1855.5 951 99.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1807.7 953 98.0
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1783.5 953 96.0
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1772.3 927 98.3
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1748.8 953 94.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1718.7 952 92.9
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1717.2 952 93.2
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1641.3 986 87.0
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1639.8 934 89.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1434.1 949 76.1
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1430.2 945 75.9
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 953 75.7
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1424.8 947 76.1
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1420.6 933 76.1
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1411.4 941 76.2
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1409.4 938 76.4
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1408.3 942 75.2
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1407.1 933 76.3
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1405.6 954 74.3
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1405.2 970 73.0
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1404.4 942 74.7
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1404.0 915 77.6
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 949 74.8
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 949 74.8
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 933 76.1
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 945 75.2
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1397.5 891 78.2
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1393.6 939 74.7
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1392.9 947 75.1
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1392.9 939 74.8
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1390.9 931 75.9
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1389.4 871 78.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 949 74.1
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 871 78.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1387.9 871 78.6
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1386.3 945 74.4
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1383.6 904 76.3
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1383.2 933 74.8
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1382.9 945 74.3
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1382.5 871 77.8
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1381.7 945 74.8
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1379.4 939 73.9
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1377.8 939 73.9
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 956 72.0
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 956 73.7
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 870 78.6
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1374.8 945 74.0
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1373.2 979 71.7
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1372.5 953 73.3
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1370.9 958 71.8
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1369.4 980 70.8
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1367.4 961 72.8
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1365.5 945 74.2
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1363.2 940 73.9
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1348.2 945 72.6
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1347.4 945 72.2
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1345.9 943 73.7
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1345.1 954 71.2
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1343.9 977 69.2
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1338.6 943 73.3
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1338.2 939 72.2
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1336.2 945 72.0
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1336.2 899 74.3
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1334.7 974 69.5
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1327.0 894 74.5
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1324.7 866 75.4
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1322.4 957 70.8
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1322.4 942 71.9
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1318.9 978 68.8
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1315.8 973 69.8
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1309.3 967 69.0
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1303.1 956 69.4
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1302.3 955 69.9
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1301.2 871 75.0
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1272.7 973 68.2
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1272.3 1012 65.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1271.9 954 68.0
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1270.4 1050 64.2
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1270.0 956 68.3
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1268.4 938 67.7
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1263.1 896 70.5
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1263.1 957 68.1
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1253.0 980 66.6
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1251.1 954 66.7
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1243.0 959 67.5
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1229.9 955 65.5
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1227.2 871 71.9
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1223.4 1062 60.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1210.3 923 67.4
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1208.7 1134 57.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1202.6 951 63.5
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1192.6 933 66.1
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1179.5 900 66.3
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1162.1 996 62.4
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1140.9 961 62.4
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1139.0 945 62.3
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 0.0e+00 1138.6 634 93.2
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1138.6 882 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1079.7 952 58.8
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 4.3e-294 1015.0 693 72.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 7.4e-294 1014.2 691 72.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 3.2e-281 972.2 931 56.4
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 5.3e-268 928.3 632 75.0
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.5e-262 910.2 743 60.0
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.1e-252 877.5 690 65.9
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.5e-241 840.5 545 75.4
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.7e-174 615.5 571 56.6
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.0e-162 578.6 318 91.5
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 8.3e-152 542.3 384 72.9
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.6e-147 528.1 445 61.3
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 2.3e-117 427.9 369 56.4
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-115 421.8 471 51.4
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.6e-110 405.2 285 72.6
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 1.7e-104 385.2 279 71.0
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-87 328.6 249 64.7
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 7.9e-86 323.2 1045 27.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.3e-85 322.4 269 61.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 5.6e-84 317.0 218 74.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 8.1e-83 313.2 277 58.8
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.5e-79 301.6 321 52.3
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 2.7e-78 298.1 1056 26.3
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 5.7e-60 237.3 166 69.3
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 9.1e-58 229.9 218 61.9
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 4.2e-55 221.1 191 59.7
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-50 206.5 387 35.7
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-44 186.4 145 61.4
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.6e-41 176.0 113 79.6
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.0e-41 175.6 99 81.8
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 7.7e-41 173.7 223 43.5
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 7.7e-41 173.7 244 46.3
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 4.7e-38 164.5 104 70.2
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.0e-38 163.7 109 72.5
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 7.5e-36 157.1 89 80.9
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.3e-35 154.1 149 54.4
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 3.5e-33 148.3 119 60.5
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.2e-31 141.7 119 54.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.2e-31 141.7 480 27.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.2e-30 139.8 235 38.3
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.0e-30 137.1 94 73.4
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.3e-29 135.6 155 51.0
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-28 132.9 155 50.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-27 129.8 91 74.7
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.6e-22 111.7 108 55.6
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.6e-22 111.7 108 55.6
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.6e-22 111.7 108 55.6
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.0e-21 108.6 90 65.6
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 4.4e-20 104.8 84 72.6
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.1e-18 100.1 78 71.8
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-18 100.1 144 47.9
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.4e-18 99.8 147 42.2
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.4e-18 97.8 79 58.2
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 2.7e-17 95.5 78 69.2
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.6e-17 94.7 59 76.3
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.9e-16 91.7 61 68.9
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.9e-16 91.7 68 64.7
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.9e-16 91.7 61 65.6
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.1e-15 90.1 47 97.9
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.3e-15 88.6 79 55.7
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.7e-14 84.7 80 57.5
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 1.0e-13 83.6 49 77.6
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.0e-12 79.3 98 53.1
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.4e-12 78.2 105 43.8
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 7.5e-12 77.4 77 57.1
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.9e-08 65.1 133 39.1
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 8.6e-08 63.9 270 22.2
Thhalv10005572m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.1e-07 63.5 52 71.2
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 1.1e-07 63.5 228 22.8
BcaNung03874 Brassica carinata HOM05D001509 ORTHO05D001361 3.3e-07 62.0 164 29.3
BcaNung03870 Brassica carinata HOM05D001509 ORTHO05D001361 5.6e-07 61.2 176 27.8
SEGI_25041 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.3e-07 60.8 93 38.7
A06p48500 Brassica napus HOM05D001509 ORTHO05D001361 3.6e-06 58.5 176 27.3
BraA06t27720Z Brassica rapa HOM05D001509 ORTHO05D001361 3.6e-06 58.5 176 27.3
BcaNung02337 Brassica carinata HOM05D001509 ORTHO05D001361 4.7e-06 58.2 176 26.7
C07p63180 Brassica napus HOM05D001509 ORTHO05D001361 4.7e-06 58.2 176 26.7
BolC7t46728H Brassica oleracea HOM05D001509 ORTHO05D001361 4.7e-06 58.2 176 26.7
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 4.7e-06 58.2 62 48.4
Sp7g36420 Schrenkiella parvula HOM05D001509 ORTHO05D001361 4.7e-06 58.2 176 26.1


User provided reference genes

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