Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 4.6e-233 810.8 403 100.0
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.4e-229 799.3 411 97.8
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.4e-220 768.1 405 96.3
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.4e-220 768.1 405 96.3
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.2e-219 765.4 405 96.0
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 5.9e-188 661.0 409 84.4
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 2.7e-185 652.1 412 85.4
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 8.3e-166 587.4 403 77.9
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.1e-161 572.8 408 75.0
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 8.0e-161 570.9 403 75.2
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.4e-159 565.5 402 75.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.7e-156 555.8 403 73.7
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.0e-135 486.5 399 65.9
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 4.9e-134 481.9 356 64.9
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 5.1e-131 471.9 341 68.6
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 5.1e-131 471.9 394 64.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 8.6e-131 471.1 392 61.5
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.5e-130 470.3 356 66.0
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.9e-130 469.9 347 68.3
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 2.5e-130 469.5 370 64.6
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.3e-130 468.8 374 65.2
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.6e-129 465.7 320 71.9
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 3.6e-129 465.7 321 71.3
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.7e-129 465.3 357 63.6
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.3e-128 463.0 319 70.8
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.3e-128 463.0 317 71.9
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 4.0e-128 462.2 348 66.7
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 6.8e-128 461.5 323 68.4
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 8.9e-128 461.1 313 72.2
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 3.4e-127 459.1 318 72.0
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 6.4e-126 454.9 320 71.6
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.4e-125 453.8 318 70.4
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.4e-125 453.8 357 64.7
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.9e-125 453.4 316 71.8
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.9e-125 453.4 323 69.3
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.2e-125 452.6 327 68.2
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 7.1e-125 451.4 330 68.8
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 9.2e-125 451.1 324 70.4
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.6e-124 450.3 324 69.4
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 2.7e-124 449.5 361 65.4
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.3e-123 447.2 329 67.2
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.7e-123 446.8 375 61.3
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 3.9e-123 445.7 317 69.7
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.1e-122 444.1 324 66.0
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.1e-121 439.9 339 64.9
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.1e-121 439.9 315 67.3
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.7e-121 438.7 347 64.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.2e-121 438.3 307 68.1
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 8.1e-121 438.0 330 67.0
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.8e-120 436.8 330 66.4
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.8e-120 436.8 330 66.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.4e-120 436.4 324 64.5
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.0e-120 435.6 321 67.6
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 5.2e-120 435.3 338 65.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.2e-119 434.1 338 64.2
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.0e-119 433.3 344 64.5
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 2.6e-119 433.0 252 79.4
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.4e-119 432.6 307 66.4
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 2.9e-118 429.5 332 64.8
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 3.8e-118 429.1 317 67.8
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 3.8e-118 429.1 326 66.0
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 8.4e-118 427.9 347 61.1
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 5.4e-117 425.2 323 64.4
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.2e-116 424.1 307 67.8
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-116 424.1 314 65.9
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.6e-116 423.7 335 63.3
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 2.1e-116 423.3 314 65.6
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.1e-116 423.3 341 63.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 2.7e-116 422.9 353 59.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 6.0e-116 421.8 343 62.7
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 5.1e-115 418.7 331 63.4
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 5.1e-115 418.7 388 58.5
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.3e-114 415.6 371 59.0
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 5.6e-114 415.2 314 63.4
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.8e-113 412.9 314 66.2
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.4e-112 410.6 245 78.8
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 5.3e-112 408.7 326 62.3
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 9.0e-112 407.9 334 64.4
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.7e-110 403.7 320 62.2
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 3.8e-110 402.5 380 57.1
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.4e-109 399.8 341 61.9
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 7.1e-109 398.3 307 64.5
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.1e-108 396.7 354 58.5
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 5.1e-107 392.1 386 56.0
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 9.6e-106 387.9 328 61.6
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.2e-103 380.9 327 58.1
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.2e-101 372.5 298 63.4
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 6.7e-99 365.2 338 58.0
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.5e-98 364.0 310 61.6
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 2.5e-98 363.2 324 59.6
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.1e-97 360.1 319 56.4
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.7e-94 350.5 300 60.7
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 7.9e-92 341.7 230 69.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 8.7e-91 338.2 192 79.2
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.0e-87 327.0 285 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 3.8e-86 322.8 335 50.4
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 3.2e-85 319.7 246 62.6
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.3e-82 309.7 311 52.7
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.4e-82 308.5 193 74.6
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 6.9e-80 302.0 281 53.4
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 6.1e-76 288.9 269 52.8
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 3.9e-75 286.2 329 44.1
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.9e-69 267.3 196 61.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 6.7e-67 258.8 350 48.3
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.2e-63 248.1 230 50.9
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.8e-57 226.1 130 76.2
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.4e-56 223.8 294 46.3
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 7.0e-56 222.2 123 81.3
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 4.0e-51 206.5 175 61.1
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.5e-47 193.4 114 80.7
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.9e-46 190.3 169 56.2
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 9.5e-45 185.3 112 77.7
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 5.4e-40 169.5 184 53.3
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.1e-37 161.8 173 53.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 7.3e-37 159.1 270 38.5
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.1e-36 157.5 99 73.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.3e-33 148.3 198 39.4
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.3e-33 148.3 173 50.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.4e-27 128.3 62 88.7
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 4.9e-25 119.8 302 29.1
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.5e-23 113.6 73 75.3
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.0e-22 110.5 99 62.6
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.5e-21 108.2 56 78.6
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 4.0e-19 100.1 61 80.3
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-17 94.7 63 73.0
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.2e-17 94.4 149 39.6
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.7e-17 93.6 195 37.4
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 3.7e-17 93.6 77 62.3
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.4e-16 90.9 185 36.2
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.4e-16 90.9 78 57.7
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 3.9e-14 83.6 148 39.2
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 4.7e-12 76.6 53 69.8
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 5.8e-10 69.7 109 38.5
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 8.4e-09 65.9 40 77.5
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.2e-08 63.9 40 75.0
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 6.0e-07 59.7 113 39.8


User provided reference genes

Program Settings