Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.3e-310 1068.9 547 100.0
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.2e-308 1062.4 553 98.9
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 7.7e-300 1033.1 554 96.4
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 7.2e-298 1026.5 560 95.4
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-295 1019.2 556 95.7
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 5.4e-277 957.2 556 89.9
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.6e-273 945.7 557 88.2
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.3e-270 936.0 555 87.2
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 4.1e-269 931.0 557 86.5
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 4.6e-268 927.5 556 86.3
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 8.6e-267 923.3 556 86.2
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.0e-255 885.6 549 83.2
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.8e-249 865.1 551 80.0
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.3e-246 856.3 556 79.3
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.8e-241 838.6 553 76.5
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 9.0e-240 833.6 553 76.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.5e-239 832.8 553 76.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 5.8e-239 830.9 566 74.6
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 4.2e-237 824.7 553 75.6
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.1e-234 816.6 560 73.0
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 4.3e-234 814.7 565 73.1
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 7.4e-234 813.9 556 74.3
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.6e-233 812.8 552 73.0
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 6.2e-233 810.8 560 73.0
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.4e-232 809.7 550 73.1
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 3.1e-232 808.5 550 73.3
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 3.1e-232 808.5 556 73.2
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 9.0e-232 807.0 554 73.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 3.4e-231 805.1 546 73.4
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 5.8e-231 804.3 553 73.4
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 5.8e-231 804.3 516 75.6
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.0e-230 803.5 555 72.8
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.0e-230 803.5 552 73.9
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.3e-230 803.1 552 73.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 1.7e-230 802.7 549 72.5
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.7e-230 802.7 554 73.5
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.9e-230 802.0 567 72.3
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 8.4e-230 800.4 554 73.1
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.4e-229 799.7 578 69.7
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.5e-229 798.9 550 73.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.2e-229 798.1 554 72.7
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 7.1e-229 797.3 550 72.5
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 7.1e-229 797.3 549 73.4
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 7.1e-229 797.3 546 72.3
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.6e-228 796.2 572 71.2
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.1e-228 795.8 548 72.6
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.1e-228 795.8 554 72.7
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.1e-228 795.8 553 72.3
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.6e-228 794.7 553 72.2
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 6.0e-228 794.3 594 68.2
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 7.9e-228 793.9 562 71.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.0e-227 793.5 557 70.9
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.8e-227 792.7 577 70.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.0e-227 792.0 550 73.5
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 3.0e-227 792.0 553 72.5
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 3.9e-227 791.6 552 72.5
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 2.5e-226 788.9 550 72.5
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.5e-226 788.9 550 72.4
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 8.2e-225 783.9 548 72.3
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.8e-224 782.7 597 68.2
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 3.1e-224 781.9 550 72.5
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 6.5e-222 774.2 552 70.7
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.5e-222 774.2 559 70.3
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.1e-221 773.5 491 75.8
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.4e-221 773.1 522 74.5
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 4.2e-221 771.5 529 72.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 3.5e-220 768.5 552 70.8
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.5e-218 762.3 559 69.6
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.7e-217 758.4 522 73.6
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 3.7e-217 758.4 510 73.1
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 6.3e-217 757.7 463 78.8
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 7.7e-215 750.7 582 67.0
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.0e-214 750.4 483 75.4
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.5e-213 745.7 669 60.1
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 7.4e-210 734.2 535 68.4
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.1e-208 728.8 607 63.8
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.7e-204 715.7 517 70.2
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.0e-203 713.8 495 72.5
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 9.7e-202 707.2 603 63.2
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 4.8e-201 704.9 446 76.5
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.8e-200 703.0 536 67.5
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 7.0e-200 701.0 498 70.1
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.6e-199 699.1 484 70.0
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.7e-198 696.4 546 67.0
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 6.5e-198 694.5 553 66.5
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 3.6e-196 688.7 489 69.9
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.2e-195 684.9 532 63.7
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 6.7e-195 684.5 443 75.6
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.0e-194 682.9 584 63.4
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 4.4e-194 681.8 481 69.6
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 9.7e-194 680.6 501 69.7
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 9.4e-189 664.1 483 69.4
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 5.4e-184 648.3 516 61.0
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.1e-181 640.6 529 59.9
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.2e-181 639.0 481 66.9
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.2e-180 637.1 485 67.6
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.6e-180 636.7 516 61.4
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 5.7e-178 628.2 536 60.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.5e-173 613.6 426 70.9
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.0e-171 607.4 523 61.8
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 6.8e-171 604.7 518 62.4
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 3.4e-170 602.4 322 96.9
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 2.8e-164 582.8 471 63.9
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 4.0e-163 578.9 549 58.5
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 7.3e-157 558.1 457 65.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.6e-156 557.0 486 58.4
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.2e-155 552.0 346 78.6
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 7.8e-151 538.1 485 57.7
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 3.1e-147 526.2 371 73.0
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 4.1e-144 515.8 322 80.1
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.0e-130 470.3 484 47.1
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.7e-129 467.2 294 78.2
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 2.5e-112 410.2 274 74.5
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.6e-108 397.5 444 49.5
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.0e-105 388.3 389 56.6
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-102 377.9 257 72.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.6e-95 353.2 228 74.1
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.2e-84 317.4 204 75.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.4e-78 298.1 212 69.3
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 9.1e-75 285.4 487 35.3
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.9e-73 280.4 183 73.8
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 5.5e-72 276.2 210 65.7
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.2e-71 275.0 196 69.4
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 8.3e-68 262.3 219 61.2
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-63 248.4 238 59.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.1e-59 235.3 135 76.3
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-52 211.8 142 73.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 2.4e-51 207.6 249 49.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.1e-48 198.7 470 31.9
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 8.0e-47 192.6 118 86.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.1e-39 167.9 361 33.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 3.1e-38 164.1 89 82.0
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 3.1e-38 164.1 89 82.0
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.0e-38 163.7 134 60.4
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 5.1e-33 146.7 146 54.1
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 3.1e-30 137.5 147 59.2
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 9.9e-29 132.5 114 64.0
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.7e-28 131.7 123 56.1
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.3e-25 121.3 136 56.6
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.1e-25 120.2 69 81.2
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 2.2e-20 104.8 102 64.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 2.2e-20 104.8 84 60.7
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 2.9e-20 104.4 67 80.6
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.6e-18 98.6 52 86.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.7e-17 95.1 125 41.6
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.0e-17 94.4 64 75.0
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 5.1e-17 93.6 65 70.8
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 1.1e-16 92.4 57 80.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.6e-15 87.4 61 73.8
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.2e-11 74.3 59 64.4
C01p25580 Brassica napus HOM05D016273 ORTHO05D019880 1.8e-09 68.6 87 47.1
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 3.9e-09 67.4 46 71.7
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 5.1e-09 67.0 87 46.0
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.7e-09 66.6 50 68.0
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 6.7e-09 66.6 72 54.2
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 5.6e-08 63.5 88 50.0
A10p05650 Brassica napus HOM05D016273 ORTHO05D019880 9.6e-08 62.8 83 45.8
BraA10t42826Z Brassica rapa HOM05D016273 ORTHO05D019880 9.6e-08 62.8 83 45.8
C03p82190 Brassica napus HOM05D016273 ORTHO05D019880 1.3e-07 62.4 83 45.8
BolC3t20533H Brassica oleracea HOM05D016273 ORTHO05D019880 1.3e-07 62.4 83 45.8
BolC1t02154H Brassica oleracea HOM05D016273 ORTHO05D106340 2.1e-07 61.6 87 44.8
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 8.1e-07 59.7 45 62.2
C01p22240 Brassica napus HOM05D016273 ORTHO05D019880 1.1e-06 59.3 78 44.9
BcaB05g23001 Brassica carinata HOM05D037835 ORTHO05D032319 2.4e-06 58.2 41 75.6
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.9e-06 56.6 43 58.1


User provided reference genes

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