Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-190 669.5 358 100.0
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 6.8e-188 660.6 358 98.9
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-180 636.7 358 94.1
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-179 632.1 359 93.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.2e-178 629.0 358 93.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 7.3e-174 614.0 367 91.3
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 3.9e-167 591.7 364 89.3
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 3.9e-167 591.7 364 89.3
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-165 585.9 363 88.4
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 4.8e-165 584.7 367 87.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 4.8e-165 584.7 367 87.5
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 8.1e-165 583.9 366 89.1
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.8e-164 582.8 363 88.2
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 5.3e-164 581.3 361 87.8
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 7.6e-163 577.4 361 87.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 7.6e-163 577.4 361 87.3
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.2e-160 570.1 361 86.7
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.3e-159 566.6 364 86.3
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.4e-153 545.8 367 82.6
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 4.2e-153 545.0 367 82.8
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.5e-150 536.6 349 85.7
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 5.6e-150 534.6 364 81.3
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 8.2e-149 530.8 362 81.5
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 6.9e-124 448.0 334 76.0
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.3e-111 406.4 371 62.0
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.3e-106 390.6 374 59.1
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 4.4e-86 322.4 371 51.8
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 5.8e-86 322.0 368 51.1
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 8.3e-85 318.2 368 50.8
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.1e-84 317.8 365 48.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.8e-84 317.0 368 50.0
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.8e-84 317.0 368 50.0
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.4e-84 316.6 378 47.4
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.0e-84 315.1 371 49.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 9.2e-84 314.7 378 47.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-83 314.3 371 49.9
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-83 314.3 371 51.2
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.6e-83 313.9 371 49.6
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.0e-83 313.5 371 51.5
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.6e-83 312.4 366 50.0
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.6e-83 312.4 371 49.3
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 7.8e-83 311.6 367 50.1
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.6e-82 308.5 363 49.3
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 8.6e-82 308.1 364 49.2
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.9e-81 307.0 366 50.3
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 5.6e-81 305.4 368 50.5
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-80 303.5 371 48.5
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.7e-80 302.4 371 48.2
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 8.0e-80 301.6 370 49.2
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.0e-80 301.6 370 49.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.0e-80 301.6 371 48.5
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.0e-79 299.3 370 47.8
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 4.0e-79 299.3 364 48.9
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 6.8e-79 298.5 363 47.9
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.8e-79 298.5 375 46.9
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 8.9e-79 298.1 364 48.9
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.4e-78 296.2 329 50.8
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.4e-78 296.2 371 48.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.3e-77 294.3 379 47.0
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.7e-77 293.9 320 51.2
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 4.1e-76 289.3 319 52.0
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 5.4e-76 288.9 373 48.3
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 9.2e-76 288.1 377 45.6
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 9.2e-76 288.1 374 45.5
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.7e-75 286.6 370 47.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 4.6e-75 285.8 365 47.4
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.7e-74 283.9 372 45.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.7e-74 283.9 365 46.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-74 283.5 370 45.9
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 2.3e-74 283.5 336 50.6
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 5.0e-74 282.3 369 47.2
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 5.0e-74 282.3 360 46.7
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.1e-73 281.2 366 47.0
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.5e-73 280.8 352 46.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.5e-73 280.0 366 47.3
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.3e-73 279.6 374 45.5
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 4.3e-73 279.3 354 47.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.2e-72 277.7 365 46.3
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.2e-72 277.7 374 43.9
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.8e-72 276.6 408 44.4
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.6e-72 276.2 350 47.4
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 8.1e-72 275.0 358 46.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 8.1e-72 275.0 367 46.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.8e-71 273.9 365 46.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.8e-71 273.9 337 46.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 6.8e-71 271.9 364 42.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 8.9e-71 271.6 354 46.3
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.3e-69 267.7 357 45.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.7e-69 266.2 358 45.5
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.1e-68 264.6 364 44.5
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.4e-68 264.2 365 43.3
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.1e-67 260.4 369 43.1
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 2.7e-67 260.0 347 46.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 4.6e-67 259.2 349 45.3
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 6.0e-67 258.8 364 43.4
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.0e-66 258.1 369 43.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.7e-66 257.3 364 43.1
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.3e-66 256.9 377 42.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 6.6e-66 255.4 362 43.9
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.5e-65 253.4 367 44.1
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.3e-65 253.1 369 42.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 7.3e-65 251.9 367 43.3
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 7.3e-65 251.9 306 46.7
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.6e-64 250.8 327 45.0
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 2.8e-64 250.0 372 43.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 4.7e-64 249.2 369 44.4
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.1e-63 248.1 344 45.3
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.8e-63 247.3 369 44.4
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.8e-63 247.3 369 43.1
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.9e-61 240.0 370 40.8
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 7.1e-60 235.3 348 40.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.7e-59 233.4 395 40.0
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.6e-58 228.8 326 45.4
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 6.6e-58 228.8 358 36.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.5e-57 227.6 364 39.6
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.6e-57 225.7 303 44.2
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 5.6e-57 225.7 320 43.4
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.1e-56 223.8 370 41.6
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.3e-53 214.5 363 41.0
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.7e-53 214.2 345 40.9
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.2e-53 213.8 373 39.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 8.4e-53 211.8 326 40.8
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.4e-52 211.1 344 39.0
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 5.4e-52 209.1 354 39.5
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.4e-47 194.5 281 42.0
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 9.9e-46 188.3 373 39.7
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.2e-45 187.2 332 38.3
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 8.4e-45 185.3 277 41.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.5e-41 173.7 277 39.0
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 3.8e-37 159.8 193 46.1
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 7.6e-30 135.6 128 59.4
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.6e-27 127.9 130 54.6
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.3e-25 120.2 377 32.6
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.3e-23 112.8 136 43.4
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.6e-22 110.5 387 28.7
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.9e-22 109.4 138 41.3
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-19 101.3 130 42.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.9e-19 99.0 125 42.4
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.1e-18 96.3 254 30.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.0e-17 94.4 157 40.1
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.3e-16 91.7 356 25.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.8e-16 89.7 374 25.1
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.9e-15 85.9 194 33.5
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.0e-14 84.3 377 25.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.1e-12 78.6 100 42.0
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 5.5e-12 76.3 96 45.8
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.0e-10 70.5 234 25.6
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 9.7e-09 65.5 127 32.3
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.4e-07 61.6 61 45.9
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 5.9e-06 56.2 84 38.1
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.7e-06 55.8 78 39.7
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.7e-06 55.8 78 39.7


User provided reference genes

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