Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 2.9e-120 435.3 222 100.0
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 4.2e-111 404.8 222 93.7
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 4.5e-105 384.8 219 91.8
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 4.5e-105 384.8 219 91.8
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 4.5e-105 384.8 219 91.8
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 1.7e-88 329.7 252 73.4
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 1.1e-87 327.0 257 72.0
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 3.0e-85 318.9 244 73.4
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 3.0e-85 318.9 244 73.4
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 2.8e-83 312.4 232 75.0
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 2.0e-81 306.2 227 76.2
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 2.0e-81 306.2 227 76.2
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 8.5e-80 300.8 235 74.0
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 2.4e-74 282.7 243 67.1
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 1.2e-70 270.4 238 65.1
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 1.2e-70 270.4 242 64.9
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 6.1e-70 268.1 247 63.2
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 2.9e-64 249.2 251 58.6
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 3.5e-33 146.0 158 51.3
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 5.1e-32 142.1 99 69.7
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 6.6e-32 141.7 104 65.4
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 1.5e-31 140.6 98 68.4
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 3.6e-30 136.0 110 63.6
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 6.2e-30 135.2 110 60.9
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 6.2e-30 135.2 110 62.7
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 6.2e-30 135.2 110 62.7
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 9.9e-28 127.9 110 60.9
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 1.3e-27 127.5 110 60.0
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 1.7e-27 127.1 110 60.9
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 6.4e-27 125.2 110 60.0
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 2.4e-26 123.2 110 60.0
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 1.2e-25 120.9 94 66.0
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 1.2e-25 120.9 104 56.7
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 1.2e-25 120.9 110 58.2
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.6e-25 120.6 94 62.8
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.6e-25 120.6 94 62.8
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 6.0e-25 118.6 130 46.9
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 1.7e-24 117.1 97 58.8
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.1e-23 114.4 98 59.2
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.5e-23 114.0 98 58.2
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.5e-23 114.0 115 51.3
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 4.3e-23 112.5 99 55.6
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 1.6e-22 110.5 99 54.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.1e-22 110.2 99 56.6
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 2.1e-22 110.2 91 60.4
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 2.1e-22 110.2 91 60.4
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 4.7e-22 109.0 90 58.9
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 2.4e-21 106.7 98 52.0
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 2.4e-21 106.7 98 55.1
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 4.0e-21 105.9 66 75.8
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 5.8e-20 102.1 91 58.2
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 5.8e-20 102.1 77 62.3
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 7.6e-20 101.7 83 57.8
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 9.9e-20 101.3 97 55.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.9e-19 99.8 96 53.1
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 4.9e-19 99.0 75 65.3
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 1.9e-18 97.1 79 60.8
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 1.9e-18 97.1 79 60.8
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 5.4e-18 95.5 106 45.3
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 9.3e-18 94.7 89 55.1
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 9.3e-18 94.7 96 53.1
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 1.2e-17 94.4 71 62.0
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 2.1e-17 93.6 130 41.5
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 5.1e-16 89.0 77 57.1
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 5.6e-15 85.5 110 40.0
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 2.1e-14 83.6 71 53.5
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 4.0e-13 79.3 185 31.4
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 3.4e-12 76.3 76 51.3
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 3.8e-11 72.8 78 51.3
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 4.6e-09 65.9 76 38.2
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 4.6e-09 65.9 76 38.2
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 3.0e-08 63.2 55 54.5


User provided reference genes

Program Settings