Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 9.2e-99 363.6 192 100.0
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 2.7e-98 362.1 192 99.5
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 5.8e-93 344.4 192 94.3
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 5.8e-93 344.4 192 94.3
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 7.6e-93 344.0 192 94.3
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 1.3e-87 326.6 192 90.1
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 1.4e-86 323.2 193 90.2
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 3.8e-84 315.1 192 86.5
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 1.3e-79 300.1 195 83.6
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 1.1e-78 297.0 194 85.6
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 1.1e-78 297.0 193 85.5
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 2.6e-77 292.4 195 81.5
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 1.4e-75 286.6 192 78.1
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 5.5e-75 284.6 192 82.3
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 7.4e-72 274.2 192 78.1
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 7.4e-72 274.2 192 78.1
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 7.4e-72 274.2 192 78.1
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 1.5e-61 240.0 171 77.2
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 4.5e-61 238.4 171 76.6
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 2.5e-59 232.6 192 67.2
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 1.1e-46 190.7 181 58.6
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 1.8e-46 189.9 189 57.7
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 2.4e-46 189.5 190 55.3
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 9.1e-46 187.6 188 54.3
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.2e-45 187.2 187 53.5
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 1.2e-45 187.2 190 54.7
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 1.2e-45 187.2 189 56.6
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 2.0e-45 186.4 191 53.4
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 2.0e-45 186.4 189 55.0
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 2.6e-45 186.0 188 54.8
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 2.6e-45 186.0 193 54.4
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 2.6e-45 186.0 190 53.2
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 4.5e-45 185.3 188 52.7
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 4.5e-45 185.3 188 53.7
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 4.5e-45 185.3 195 51.8
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 5.9e-45 184.9 191 54.5
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 5.9e-45 184.9 187 51.3
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 5.9e-45 184.9 192 53.1
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 7.7e-45 184.5 188 53.2
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 1.0e-44 184.1 189 54.5
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 1.3e-44 183.7 189 54.5
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 1.7e-44 183.3 190 54.2
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 2.2e-44 183.0 191 54.5
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 2.2e-44 183.0 189 52.9
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 2.2e-44 183.0 196 52.6
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 3.8e-44 182.2 186 54.8
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 6.5e-44 181.4 191 53.4
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 8.5e-44 181.0 190 51.6
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 1.1e-43 180.6 196 52.6
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 1.9e-43 179.9 185 54.6
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 3.2e-43 179.1 195 51.3
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 3.2e-43 179.1 194 53.1
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 5.5e-43 178.3 189 52.4
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 7.2e-43 177.9 193 52.3
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 9.4e-43 177.6 192 52.1
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 1.2e-42 177.2 188 54.3
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 1.2e-42 177.2 189 53.4
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 1.2e-42 177.2 189 53.4
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.2e-42 177.2 187 52.9
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 1.6e-42 176.8 196 51.5
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 1.6e-42 176.8 192 50.5
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 1.6e-42 176.8 192 51.0
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 1.6e-42 176.8 190 51.1
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 2.1e-42 176.4 126 67.5
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 6.1e-42 174.9 187 52.9
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 8.0e-42 174.5 189 50.8
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 8.0e-42 174.5 187 51.9
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 1.0e-41 174.1 193 50.3
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 1.4e-41 173.7 197 53.8
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 1.8e-41 173.3 190 50.5
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 1.1e-40 170.6 189 51.9
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 1.5e-40 170.2 190 50.0
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 2.6e-40 169.5 188 53.7
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 3.3e-40 169.1 194 50.5
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 3.3e-40 169.1 187 50.3
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 5.7e-40 168.3 191 49.2
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 5.7e-40 168.3 192 48.4
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 5.7e-40 168.3 188 50.0
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 7.4e-40 167.9 191 51.8
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 7.4e-40 167.9 188 50.0
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 1.3e-39 167.2 191 50.8
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 1.3e-39 167.2 187 50.8
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 1.7e-39 166.8 189 51.3
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 2.2e-39 166.4 192 49.0
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 4.8e-39 165.2 188 48.9
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 6.3e-39 164.9 127 63.8
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 8.2e-39 164.5 193 48.7
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 1.1e-38 164.1 189 48.7
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 1.4e-38 163.7 188 50.5
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.8e-38 163.3 138 58.0
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 3.1e-38 162.5 182 51.1
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 5.3e-38 161.8 190 47.9
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 7.0e-38 161.4 187 46.0
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 7.7e-37 157.9 113 67.3
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 2.2e-36 156.4 110 67.3
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 3.8e-36 155.6 130 63.1
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 1.1e-35 154.1 185 47.6
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 1.9e-35 153.3 204 45.6
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 1.9e-35 153.3 194 47.4
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 5.5e-35 151.8 136 56.6
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 7.2e-35 151.4 227 42.3
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 9.4e-35 151.0 113 64.6
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 4.7e-34 148.7 193 50.3
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 1.8e-30 136.7 191 45.0
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 2.9e-28 129.4 131 54.2
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 3.6e-26 122.5 189 40.7
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 3.6e-26 122.5 195 40.5
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 6.1e-26 121.7 183 41.0
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.7e-23 113.6 93 57.0
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 2.4e-22 109.8 92 59.8
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 2.0e-21 106.7 83 60.2
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 2.9e-20 102.8 131 50.4
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 3.8e-20 102.4 94 54.3
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 1.1e-19 100.9 173 38.7
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 1.5e-16 90.5 188 36.7
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.7e-15 87.0 109 47.7
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 6.3e-15 85.1 66 60.6
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 5.4e-14 82.0 127 40.2
BolC7t43135H Brassica oleracea HOM05D006081 ORTHO05D033520 1.2e-13 80.9 47 85.1
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 1.2e-13 80.9 126 38.1
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 1.2e-10 70.9 102 48.0
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 4.7e-10 68.9 173 28.9
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 4.0e-09 65.9 93 45.2
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 2.0e-08 63.5 101 43.6
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 5.8e-08 62.0 125 29.6


User provided reference genes

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