Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 6.8e-240 833.6 415 100.0
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 2.8e-225 785.0 415 94.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 4.4e-223 777.7 417 94.7
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.9e-222 775.0 415 94.0
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.9e-218 762.3 415 92.5
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-217 757.7 416 92.3
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 8.1e-217 756.9 419 91.6
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 6.9e-216 753.8 416 92.3
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 9.0e-216 753.4 415 91.3
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 3.4e-215 751.5 415 91.3
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 9.3e-213 743.4 392 94.6
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 6.0e-212 740.7 415 90.8
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.9e-206 721.8 415 88.9
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 2.4e-205 718.8 419 88.5
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.7e-204 715.3 418 87.1
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-197 692.2 415 85.5
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 4.3e-194 681.4 374 90.9
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.8e-193 678.7 374 90.6
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.2e-191 673.3 411 82.2
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-191 671.8 415 83.9
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 3.2e-189 665.2 348 93.7
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.4e-168 596.7 412 72.8
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 5.9e-167 591.3 412 71.4
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.2e-166 589.3 412 72.6
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.1e-165 587.0 297 94.6
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.9e-165 586.3 412 72.1
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.9e-165 586.3 412 70.6
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.1e-164 582.8 412 70.9
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.3e-163 579.3 415 71.6
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 4.0e-163 578.6 418 69.4
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.6e-162 575.9 412 70.4
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 5.7e-162 574.7 449 66.1
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 2.8e-161 572.4 412 70.6
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 2.8e-161 572.4 412 70.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.1e-160 570.5 411 69.8
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.4e-160 570.1 404 71.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 7.0e-160 567.8 411 70.1
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.6e-159 566.6 404 71.5
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 4.5e-159 565.1 404 71.0
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 7.7e-159 564.3 413 69.2
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-158 563.5 414 67.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.9e-158 562.4 352 77.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.9e-158 562.4 435 65.3
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.5e-158 561.2 349 77.7
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 8.5e-158 560.8 349 77.7
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 404 69.3
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.5e-157 560.1 348 77.6
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 4.2e-157 558.5 356 75.0
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 5.5e-157 558.1 356 74.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 5.5e-157 558.1 367 73.6
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 7.2e-157 557.8 398 68.8
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.2e-156 557.0 413 67.1
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.2e-156 557.0 349 76.8
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.2e-156 557.0 386 71.8
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 3.6e-156 555.4 404 69.3
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 6.1e-156 554.7 404 68.8
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 8.0e-156 554.3 414 69.1
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.0e-155 553.9 364 74.2
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.4e-155 553.5 406 67.7
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.8e-155 553.1 345 76.2
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.0e-155 552.4 343 77.0
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 4.0e-155 552.0 398 68.8
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 6.8e-155 551.2 402 68.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 6.8e-155 551.2 350 75.4
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.8e-155 551.2 363 73.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 2.0e-154 549.7 408 66.2
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.6e-154 549.3 396 73.2
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 2.6e-154 549.3 388 71.4
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 3.4e-154 548.9 406 67.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.4e-154 548.9 371 72.5
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 5.7e-154 548.1 340 76.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 5.7e-154 548.1 365 73.4
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 7.5e-154 547.7 379 70.4
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 9.8e-154 547.4 352 73.3
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.7e-153 546.6 376 72.1
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.2e-153 546.2 344 76.2
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 6.3e-153 544.7 397 68.3
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 6.3e-153 544.7 340 76.2
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.4e-152 543.5 334 76.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 5.4e-152 541.6 388 69.3
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 7.0e-152 541.2 412 68.0
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 7.0e-152 541.2 387 69.0
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.2e-151 540.4 364 73.4
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.6e-151 540.0 353 73.4
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.0e-151 539.7 341 75.4
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 2.0e-151 539.7 352 73.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.7e-151 539.3 342 75.4
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.7e-151 539.3 347 74.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.7e-151 539.3 353 74.5
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 4.5e-151 538.5 377 71.6
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 4.5e-151 538.5 341 74.8
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 5.9e-151 538.1 389 68.4
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 5.9e-151 538.1 416 66.3
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.0e-150 537.3 412 65.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.0e-150 537.3 387 68.0
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-150 535.8 357 72.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.9e-150 535.8 346 75.1
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 2.9e-150 535.8 340 75.3
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-150 535.4 342 74.3
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-149 533.5 342 74.0
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.5e-149 533.5 378 68.5
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.9e-149 533.1 374 72.5
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 9.4e-149 530.8 412 66.5
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.7e-148 529.3 352 70.2
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 3.6e-148 528.9 340 73.5
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-147 527.3 419 67.3
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-147 527.3 419 67.3
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.8e-147 526.6 347 72.6
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.6e-146 522.7 419 66.8
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.3e-145 520.4 328 74.4
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.7e-145 520.0 337 75.4
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 6.3e-145 518.1 298 83.2
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.1e-144 517.3 346 70.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 3.1e-144 515.8 332 72.9
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 4.5e-143 511.9 328 73.5
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 4.3e-141 505.4 339 70.5
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 9.5e-141 504.2 316 75.9
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.6e-140 503.4 342 69.0
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 5.4e-136 488.4 332 67.8
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-134 482.6 407 61.7
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 6.6e-134 481.5 335 65.7
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.9e-133 479.9 284 79.9
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-129 465.3 325 68.9
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.3e-123 446.4 341 66.0
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-123 446.0 278 74.5
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.1e-120 437.6 340 62.4
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 5.1e-118 428.7 375 61.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.6e-111 407.1 325 59.7
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.8e-108 396.4 352 58.0
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 6.2e-108 395.2 336 58.3
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.4e-107 393.3 341 63.6
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.5e-106 390.6 263 73.0
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 4.0e-99 365.9 292 59.6
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.0e-94 349.7 272 65.4
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.1e-85 321.2 191 80.6
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.5e-85 320.1 188 80.9
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.2e-80 303.1 256 61.7
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-77 293.5 303 52.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-74 283.1 143 93.0
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.4e-67 260.4 158 77.8
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.2e-66 258.1 163 73.0
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 9.4e-64 248.4 275 49.8
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 3.2e-56 223.4 306 43.1
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-54 216.5 236 50.8
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-49 201.8 209 52.6
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.4e-43 180.6 272 40.1
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.6e-42 177.9 116 70.7
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.9e-42 176.0 142 65.5
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-40 171.8 132 64.4
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-38 164.5 142 63.4
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-38 164.5 142 63.4
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.4e-37 159.8 122 66.4
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 2.0e-29 134.4 240 37.1
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-28 129.4 159 45.9
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-28 129.4 159 45.9
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 9.2e-19 99.0 173 35.3
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.0e-17 95.5 53 73.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.0e-17 95.5 53 73.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-11 73.6 51 66.7


User provided reference genes

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