Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-52 208.0 95 100.0
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 3.2e-52 208.0 95 100.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-51 204.9 95 97.9
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-51 204.9 95 97.9
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 5.1e-50 200.7 95 96.8
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 2.5e-44 181.8 95 87.4
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 3.9e-42 174.5 96 82.3
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 3.9e-42 174.5 96 82.3
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.1e-41 172.9 95 84.2
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.8e-40 167.5 95 80.0
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.8e-40 167.5 95 80.0
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.8e-40 167.5 95 80.0
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 2.9e-37 158.3 95 78.9
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 2.9e-37 158.3 95 78.9
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-36 156.4 95 77.9
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-36 156.4 95 77.9
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 2.5e-36 155.2 95 77.9
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 2.5e-36 155.2 95 77.9
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 2.5e-36 155.2 95 77.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.2e-36 154.5 96 77.1
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.1e-35 152.1 96 77.1
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.2e-14 83.2 81 54.3
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.5e-13 77.4 72 48.6
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 8.6e-13 77.0 76 51.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-12 76.6 68 51.5
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.1e-12 76.6 68 51.5
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.9e-12 75.9 80 53.8
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.9e-12 75.9 76 53.9
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-12 75.5 76 52.6
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.2e-12 74.7 71 56.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.2e-12 74.7 76 52.6
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.2e-12 74.7 76 52.6
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.2e-11 73.2 79 51.9
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.1e-11 72.4 80 48.8
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.1e-11 72.4 96 46.9
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.1e-11 72.4 96 46.9
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.1e-11 72.4 96 46.9
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 3.6e-11 71.6 35 88.6
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.7e-11 71.2 96 45.8
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 6.1e-11 70.9 85 48.2
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.0e-10 70.1 76 48.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.4e-10 69.7 85 45.9
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 50.0
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 50.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 50.0
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-10 69.3 78 48.7
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.3e-10 68.9 76 48.7
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.0e-10 68.6 77 46.8
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 3.0e-10 68.6 75 46.7
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 4.0e-10 68.2 83 38.6
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.0e-10 68.2 73 50.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 5.2e-10 67.8 87 43.7
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.5e-09 66.2 56 58.9
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-09 65.9 80 41.2
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-09 65.9 80 41.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.0e-09 65.9 80 41.2
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.0e-09 65.9 74 48.6
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.6e-09 65.5 67 47.8
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 3.4e-09 65.1 79 41.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.4e-09 65.1 75 45.3
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 4.4e-09 64.7 78 42.3
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.4e-09 64.7 96 41.7
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 9.8e-09 63.5 56 55.4
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 9.8e-09 63.5 86 41.9
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 9.8e-09 63.5 63 50.8
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 9.8e-09 63.5 76 47.4
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 1.3e-08 63.2 51 58.8
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.3e-08 63.2 66 48.5
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.3e-08 63.2 63 50.8
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.7e-08 62.8 76 44.7
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.7e-08 62.8 79 41.8
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.2e-08 62.4 46 63.0
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.2e-08 62.4 75 44.0
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 2.8e-08 62.0 77 41.6
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 3.7e-08 61.6 70 50.0
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 8.3e-08 60.5 93 38.7
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 8.3e-08 60.5 55 50.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 8.3e-08 60.5 72 47.2
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 8.3e-08 60.5 80 42.5
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-07 59.7 66 51.5
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.4e-07 59.7 90 40.0
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 78 39.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 72 51.4
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-07 59.3 72 51.4
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-07 59.3 78 39.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-07 59.3 72 51.4
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.8e-07 59.3 72 51.4
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.8e-07 59.3 72 51.4
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.4e-07 58.9 81 39.5
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.1e-07 58.5 72 45.8
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.1e-07 58.5 76 40.8
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.1e-07 58.2 80 37.5
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 4.1e-07 58.2 56 50.0
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 5.4e-07 57.8 27 88.9
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 5.4e-07 57.8 27 88.9
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 5.4e-07 57.8 27 88.9
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-07 57.8 63 46.0
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 7.0e-07 57.4 80 42.5
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.2e-06 56.6 79 39.2
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.6e-06 56.2 73 45.2
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 1.6e-06 56.2 25 92.0
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 2.0e-06 55.8 56 48.2
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-06 55.8 68 44.1
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 2.7e-06 55.5 25 92.0
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-06 55.5 36 66.7
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-06 55.5 36 66.7
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 2.7e-06 55.5 36 66.7
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.7e-06 55.5 29 79.3
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.7e-06 55.5 71 42.3
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.7e-06 55.5 66 42.4
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 4.5e-06 54.7 72 40.3
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 5.9e-06 54.3 41 61.0
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 5.9e-06 54.3 27 85.2
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 7.8e-06 53.9 76 39.5


User provided reference genes

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