Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 5.5e-59 230.7 113 100.0
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 4.4e-56 221.1 108 99.1
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 2.2e-55 218.8 107 99.1
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 1.7e-52 209.1 103 99.0
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 2.2e-52 208.8 106 96.2
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 7.2e-51 203.8 103 95.1
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 3.7e-39 164.9 104 77.9
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 9.8e-32 140.2 106 64.2
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 6.3e-31 137.5 104 62.5
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 1.2e-29 133.3 129 54.3
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 1.2e-29 133.3 129 54.3
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 7.8e-29 130.6 102 61.8
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 1.7e-28 129.4 107 60.7
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 7.3e-27 124.0 98 63.3
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 7.3e-27 124.0 106 60.4
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.1e-19 100.1 101 49.5
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 9.5e-19 97.1 73 60.3
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.1e-17 92.0 73 57.5
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 6.8e-17 90.9 73 54.8
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 8.9e-17 90.5 78 48.7
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 1.5e-16 89.7 107 43.0
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 2.6e-16 89.0 93 45.2
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.6e-16 89.0 74 54.1
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 3.4e-16 88.6 74 54.1
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 7.5e-16 87.4 81 51.9
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 9.8e-16 87.0 93 43.0
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 4.9e-15 84.7 78 48.7
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 6.4e-15 84.3 104 40.4
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 6.4e-15 84.3 103 40.8
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 6.4e-15 84.3 101 44.6
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 6.4e-15 84.3 101 44.6
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 6.4e-15 84.3 101 44.6
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 8.3e-15 84.0 102 39.2
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 8.3e-15 84.0 111 41.4
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 1.1e-14 83.6 78 46.2
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.1e-14 83.6 104 41.3
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.1e-14 83.6 82 45.1
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.1e-14 83.6 106 39.6
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 1.1e-14 83.6 105 41.9
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.4e-14 83.2 79 46.8
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 1.9e-14 82.8 80 50.0
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 2.4e-14 82.4 101 41.6
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 2.4e-14 82.4 73 50.7
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 2.4e-14 82.4 109 41.3
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.2e-14 82.0 105 42.9
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 3.2e-14 82.0 97 40.2
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 3.2e-14 82.0 103 37.9
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 4.1e-14 81.6 106 38.7
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 5.4e-14 81.3 78 42.3
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 5.4e-14 81.3 104 41.3
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 7.0e-14 80.9 78 44.9
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.0e-14 80.9 73 50.7
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 9.2e-14 80.5 103 45.6
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 9.2e-14 80.5 107 39.3
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.6e-13 79.7 95 41.1
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 1.6e-13 79.7 80 47.5
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.6e-13 79.7 78 44.9
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 2.0e-13 79.3 79 44.3
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.0e-13 79.3 97 43.3
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.0e-13 79.3 99 42.4
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 2.0e-13 79.3 73 47.9
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 2.7e-13 79.0 78 43.6
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.7e-13 79.0 78 46.2
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 2.7e-13 79.0 93 40.9
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 2.7e-13 79.0 81 44.4
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 3.5e-13 78.6 96 37.5
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.5e-13 78.6 78 43.6
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 6.0e-13 77.8 78 46.2
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 6.0e-13 77.8 73 46.6
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 7.8e-13 77.4 74 44.6
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 7.8e-13 77.4 105 37.1
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 7.8e-13 77.4 106 38.7
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 1.0e-12 77.0 105 38.1
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 1.0e-12 77.0 99 41.4
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 1.0e-12 77.0 106 37.7
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.0e-12 77.0 96 41.7
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 1.3e-12 76.6 98 38.8
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.3e-12 76.6 81 44.4
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.7e-12 76.3 73 45.2
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.7e-12 76.3 99 41.4
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 1.7e-12 76.3 95 38.9
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 2.3e-12 75.9 105 41.0
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 3.0e-12 75.5 74 48.6
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 3.9e-12 75.1 77 44.2
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 6.6e-12 74.3 98 39.8
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.6e-12 74.3 94 39.4
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 8.6e-12 73.9 99 37.4
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 1.1e-11 73.6 73 41.1
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.1e-11 73.6 78 42.3
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.1e-11 73.6 76 46.1
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.5e-11 73.2 80 42.5
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 1.5e-11 73.2 104 38.5
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.5e-11 73.2 73 45.2
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.5e-11 73.2 99 36.4
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.5e-11 73.2 99 35.4
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.5e-11 73.2 74 50.0
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 1.9e-11 72.8 104 38.5
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.9e-11 72.8 99 35.4
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 3.3e-11 72.0 92 39.1
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 3.3e-11 72.0 73 43.8
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.3e-11 72.0 72 45.8
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.3e-11 72.0 72 45.8
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 4.3e-11 71.6 73 45.2
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 5.6e-11 71.2 78 42.3
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 5.6e-11 71.2 91 39.6
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 5.6e-11 71.2 97 39.2
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.3e-11 70.9 73 45.2
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 7.3e-11 70.9 80 42.5
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 9.5e-11 70.5 105 35.2
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 9.5e-11 70.5 100 41.0
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 1.2e-10 70.1 97 37.1
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 1.2e-10 70.1 78 41.0
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.2e-10 70.1 76 44.7
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.6e-10 69.7 73 43.8
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 1.6e-10 69.7 106 34.0
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.6e-10 69.7 99 41.4
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.1e-10 69.3 73 45.2
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.1e-10 69.3 83 41.0
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.1e-10 69.3 76 43.4
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 2.8e-10 68.9 74 43.2
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 3.6e-10 68.6 78 42.3
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 6.2e-10 67.8 79 39.2
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 6.2e-10 67.8 80 40.0
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.2e-10 67.8 80 41.2
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 8.1e-10 67.4 95 43.2
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 8.1e-10 67.4 85 38.8
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 8.1e-10 67.4 57 50.9
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 8.1e-10 67.4 86 40.7
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 1.1e-09 67.0 91 35.2
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.1e-09 67.0 103 33.0
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.1e-09 67.0 73 39.7
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 1.8e-09 66.2 100 33.0
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.8e-09 66.2 109 34.9
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 3.1e-09 65.5 94 31.9
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.2e-09 64.7 109 33.0
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.2e-09 64.7 112 28.6
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.8e-09 64.3 70 44.3
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.2e-08 63.5 74 41.9
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 1.5e-08 63.2 94 39.4
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 2.0e-08 62.8 100 32.0
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 2.0e-08 62.8 100 33.0
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 2.6e-08 62.4 95 34.7
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 3.4e-08 62.0 82 37.8
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 9.9e-08 60.5 97 34.0
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.3e-07 60.1 95 34.7
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 3.7e-07 58.5 78 38.5
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 1.1e-06 57.0 100 36.0
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 1.1e-06 57.0 94 31.9
A01p07300 Brassica napus HOM05D002739 ORTHO05D002877 3.2e-06 55.5 101 36.6
C01p08060 Brassica napus HOM05D002739 ORTHO05D002877 3.2e-06 55.5 101 36.6
BraA01t00679Z Brassica rapa HOM05D002739 ORTHO05D002877 3.2e-06 55.5 101 36.6
CANSAT80G1481 Cannabis sativa HOM05D002739 ORTHO05D002877 4.1e-06 55.1 87 33.3
BcaC01g01134 Brassica carinata HOM05D002739 ORTHO05D002877 5.4e-06 54.7 104 29.8
BolC3t21155H Brassica oleracea HOM05D002739 ORTHO05D002877 5.4e-06 54.7 104 29.8
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 5.4e-06 54.7 113 32.7
C03p88470 Brassica napus HOM05D002739 ORTHO05D002877 9.2e-06 53.9 104 29.8
DCAR_022358 Daucus carota HOM05D002739 ORTHO05D002877 9.2e-06 53.9 55 43.6


User provided reference genes

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