Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 5.2e-79 297.7 160 100.0
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 6.8e-79 297.4 160 99.4
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 5.9e-75 284.3 160 96.2
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 5.6e-73 277.7 160 94.4
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 4.9e-61 238.0 160 80.6
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.4e-38 162.2 166 57.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.4e-36 154.8 168 54.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-33 147.1 172 52.3
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-33 147.1 168 53.0
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 1.9e-28 129.8 175 50.9
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.7e-27 125.9 175 49.1
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.8e-26 123.2 178 48.9
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.8e-26 123.2 178 48.9
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 2.3e-26 122.9 179 48.6
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 3.9e-26 122.1 152 51.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.9e-23 111.3 161 47.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.2e-21 106.3 152 49.3
BraA03t13172Z Brassica rapa HOM05D021100 ORTHO05D021772 8.4e-21 104.4 109 58.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 5.5e-20 101.7 191 40.3
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-19 100.5 145 41.4
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.6e-19 100.1 151 41.1
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-19 100.1 151 46.4
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.1e-19 99.8 181 42.5
C03p48620 Brassica napus HOM05D021100 ORTHO05D021772 2.7e-19 99.4 111 55.0
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.7e-19 99.4 152 46.1
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.3e-18 97.1 152 44.1
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.8e-18 96.7 151 43.0
BraA03t13170Z Brassica rapa HOM05D021100 ORTHO05D021772 2.3e-18 96.3 109 56.0
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.1e-18 95.1 148 45.3
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 5.1e-18 95.1 151 39.7
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.7e-18 94.7 149 47.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 3.3e-17 92.4 150 38.7
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.3e-17 92.0 167 43.1
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.1e-16 89.7 151 40.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 2.8e-16 89.4 147 36.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.8e-16 89.4 137 46.0
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.8e-16 88.6 145 42.1
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.8e-16 88.6 158 43.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 8.2e-16 87.8 152 40.8
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 8.2e-16 87.8 148 37.8
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-15 87.4 158 42.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-15 87.4 135 39.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-15 86.7 150 43.3
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.4e-15 86.3 180 36.1
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-15 85.9 155 38.1
BolC3t17141H Brassica oleracea HOM05D021100 ORTHO05D021772 4.0e-15 85.5 92 56.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.0e-15 85.5 164 39.0
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 9.0e-15 84.3 147 40.8
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.2e-14 84.0 135 40.0
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.2e-14 84.0 151 40.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 2.6e-14 82.8 146 37.0
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 3.4e-14 82.4 153 37.3
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.4e-14 82.4 151 34.4
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 5.8e-14 81.6 134 41.8
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.8e-14 81.6 152 37.5
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 7.6e-14 81.3 144 38.2
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-13 80.9 149 41.6
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.0e-13 80.9 135 39.3
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 153 35.3
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.7e-13 80.1 158 38.6
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.7e-13 80.1 156 36.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-13 79.7 160 35.6
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.9e-13 79.3 143 37.8
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.8e-13 79.0 147 41.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 4.9e-13 78.6 138 39.1
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.9e-13 78.6 146 36.3
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 4.9e-13 78.6 147 38.8
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 6.5e-13 78.2 153 34.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.5e-13 78.2 143 37.8
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 6.5e-13 78.2 154 34.4
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.4e-13 77.8 149 35.6
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-12 77.4 153 35.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.1e-12 77.4 145 35.9
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.5e-12 76.3 143 37.1
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.2e-12 75.5 144 34.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 4.2e-12 75.5 147 41.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 4.2e-12 75.5 153 36.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 4.2e-12 75.5 150 39.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 5.5e-12 75.1 151 34.4
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 5.5e-12 75.1 151 34.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 5.5e-12 75.1 147 38.1
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 7.1e-12 74.7 148 37.8
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 9.3e-12 74.3 153 38.6
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.2e-11 73.9 161 35.4
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.6e-11 73.6 142 38.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.6e-11 73.6 142 34.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.6e-11 73.6 164 37.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 4.6e-11 72.0 154 32.5
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 4.6e-11 72.0 149 36.9
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 7.9e-11 71.2 142 39.4
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.9e-11 71.2 143 37.8
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.9e-11 71.2 143 37.8
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.9e-11 71.2 154 34.4
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-10 70.9 156 37.2
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.0e-10 70.9 149 36.2
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-10 70.9 149 34.2
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-10 69.7 166 34.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.3e-10 69.7 163 33.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 3.0e-10 69.3 150 35.3
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.0e-10 69.3 164 34.8
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.0e-10 69.3 156 35.9
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 3.9e-10 68.9 136 34.6
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 6.7e-10 68.2 134 37.3
BolC3t17140H Brassica oleracea HOM05D003565 ORTHO05D003943 8.7e-10 67.8 38 94.7
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 8.7e-10 67.8 175 33.1
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.9e-09 66.6 178 36.0
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.9e-09 66.6 164 34.8
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.3e-09 65.9 155 34.8
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-09 65.5 144 38.9
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 5.7e-09 65.1 132 37.1
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 7.4e-09 64.7 149 36.9
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 9.7e-09 64.3 129 38.0
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.7e-09 64.3 148 35.1
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.6e-08 63.5 119 37.0
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.6e-08 63.5 186 33.9
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-08 63.2 154 34.4
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-08 63.2 151 34.4
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-08 62.8 144 38.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.7e-08 62.4 136 39.0
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-08 61.6 144 38.2
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-08 61.6 144 38.2
BcaC01g03787 Brassica carinata HOM05D021100 ORTHO05D021772 1.1e-07 60.8 64 57.8
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-07 60.8 144 38.2
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.4e-07 60.5 118 36.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-07 60.5 100 41.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.4e-07 60.5 158 32.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-07 60.1 144 36.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-07 60.1 144 36.8
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-07 60.1 144 36.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.4e-07 59.7 130 36.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-07 59.7 144 36.8
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-07 59.7 119 38.7
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 3.1e-07 59.3 188 31.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 4.1e-07 58.9 137 35.8
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.1e-07 58.9 110 42.7
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.1e-07 58.9 127 34.6
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.3e-07 58.5 154 31.8
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 5.3e-07 58.5 144 36.8
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 6.9e-07 58.2 119 36.1
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 6.9e-07 58.2 119 34.5
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 9.0e-07 57.8 190 30.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.0e-07 57.8 147 35.4
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.2e-06 57.4 150 32.0
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-06 57.4 144 36.8
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.0e-06 56.6 128 37.5
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.0e-06 56.6 143 37.8
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 2.0e-06 56.6 152 28.9
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 3.4e-06 55.8 137 34.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 5.9e-06 55.1 151 32.5
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.0e-05 54.3 152 29.6


User provided reference genes

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