Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 9.3e-127 456.8 223 100.0
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 1.5e-124 449.5 223 98.2
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 2.0e-121 439.1 222 95.9
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 2.0e-121 439.1 222 95.9
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 2.0e-121 439.1 222 95.9
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 7.6e-121 437.2 222 95.5
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 1.0e-112 410.2 222 88.7
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 2.2e-112 409.1 222 89.2
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 1.2e-110 403.3 218 89.0
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 1.4e-109 399.8 222 89.6
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 1.8e-109 399.4 218 87.6
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 4.3e-108 394.8 214 88.8
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 1.8e-106 389.4 218 85.8
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 5.9e-105 384.4 221 83.3
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 2.0e-84 316.2 221 67.4
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 2.2e-83 312.8 221 67.4
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 4.8e-83 311.6 221 66.5
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 8.3e-83 310.8 221 67.0
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.4e-82 310.1 223 65.0
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 1.4e-82 310.1 215 66.0
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 7.0e-82 307.8 222 65.8
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 4.5e-81 305.1 218 65.1
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 7.7e-81 304.3 214 65.0
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.0e-80 303.9 217 65.4
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 2.2e-80 302.8 220 64.5
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 2.9e-80 302.4 198 80.3
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 2.9e-80 302.4 214 64.5
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 5.0e-80 301.6 218 65.1
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 5.0e-80 301.6 214 65.0
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 6.5e-80 301.2 217 64.1
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 1.5e-79 300.1 214 66.8
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 2.5e-79 299.3 212 65.6
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 4.2e-79 298.5 222 64.9
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 5.5e-79 298.1 222 64.0
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.6e-78 296.6 214 63.6
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 3.6e-78 295.4 218 62.4
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 6.1e-78 294.7 221 63.8
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 6.1e-78 294.7 175 79.4
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 8.0e-78 294.3 222 61.3
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 1.0e-77 293.9 218 61.9
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 3.0e-77 292.4 216 63.0
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 3.0e-77 292.4 218 61.9
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 3.0e-77 292.4 221 60.6
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 4.0e-77 292.0 217 60.8
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 5.2e-77 291.6 218 62.4
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 5.2e-77 291.6 231 62.3
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 5.2e-77 291.6 222 59.9
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 6.8e-77 291.2 219 62.1
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 1.2e-76 290.4 210 61.9
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 2.0e-76 289.7 222 60.8
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 2.0e-76 289.7 221 61.5
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 2.0e-76 289.7 213 63.4
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 2.6e-76 289.3 215 62.3
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 3.4e-76 288.9 216 62.0
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 4.4e-76 288.5 226 62.4
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 7.5e-76 287.7 225 62.2
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 1.3e-75 287.0 219 63.5
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 1.3e-75 287.0 220 62.3
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 2.2e-75 286.2 211 63.0
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 3.7e-75 285.4 213 62.0
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 6.3e-75 284.6 211 62.6
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 6.3e-75 284.6 217 59.9
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 8.3e-75 284.3 220 59.5
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 1.1e-74 283.9 215 61.9
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 1.4e-74 283.5 219 60.3
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 1.4e-74 283.5 221 59.3
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 1.4e-74 283.5 215 62.3
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 3.1e-74 282.3 215 59.1
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 5.4e-74 281.6 216 61.1
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 7.0e-74 281.2 204 65.2
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 9.2e-74 280.8 215 59.1
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 1.6e-73 280.0 216 58.8
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.6e-73 280.0 211 59.7
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 2.7e-73 279.3 183 70.5
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 5.9e-73 278.1 220 58.2
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 1.7e-72 276.6 212 59.9
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 1.5e-71 273.5 215 59.5
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 3.3e-71 272.3 218 56.9
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 5.6e-71 271.6 219 60.3
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 7.3e-71 271.2 216 58.3
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.2e-70 270.4 213 58.7
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 1.0e-69 267.3 220 55.5
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 1.4e-69 266.9 214 56.1
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 4.0e-69 265.4 218 56.9
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 5.2e-69 265.0 276 47.1
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 5.2e-69 265.0 215 58.1
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 6.8e-69 264.6 213 57.3
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 6.8e-69 264.6 215 56.7
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 6.4e-67 258.1 208 55.8
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 5.4e-66 255.0 211 57.3
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 9.2e-66 254.2 211 57.3
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 1.7e-64 250.0 209 56.9
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 1.9e-63 246.5 209 56.0
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 5.6e-63 245.0 211 55.0
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 1.0e-61 240.7 217 53.9
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.4e-61 240.4 175 62.9
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 2.3e-61 239.6 218 51.4
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 2.2e-59 233.0 248 47.6
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.6e-57 226.9 175 60.6
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 1.0e-56 224.2 213 52.6
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.9e-55 219.9 215 48.8
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 7.3e-55 218.0 174 59.8
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 1.2e-54 217.2 181 57.5
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 2.9e-51 206.1 215 47.9
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 6.4e-51 204.9 215 41.4
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 2.4e-50 203.0 222 44.6
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 1.2e-49 200.7 223 43.5
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 6.0e-49 198.4 153 62.1
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 3.0e-48 196.1 208 45.7
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 6.6e-48 194.9 214 45.3
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 1.9e-47 193.4 208 43.8
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 1.9e-47 193.4 213 43.2
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 2.6e-44 183.0 157 56.1
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 4.1e-42 175.6 159 50.9
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 5.6e-39 165.2 136 56.6
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 8.4e-35 151.4 113 61.9
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.2e-33 147.5 161 45.3
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 1.1e-29 134.4 217 31.8
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 4.9e-27 125.6 155 50.3
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 3.2e-26 122.9 82 67.1
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 2.3e-24 116.7 91 62.6
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 8.4e-19 98.2 221 28.5
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 2.4e-18 96.7 96 47.9
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 1.5e-12 77.4 54 63.0
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.5e-12 77.4 97 43.3
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 1.5e-12 77.4 115 32.2
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 2.7e-09 66.6 43 62.8
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 7.4e-07 58.5 43 58.1


User provided reference genes

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