Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 1.5e-62 242.7 121 100.0
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 3.2e-57 224.9 128 89.8
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 5.5e-57 224.2 124 92.7
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 5.5e-57 224.2 124 92.7
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 8.0e-56 220.3 124 91.1
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 4.0e-55 218.0 124 90.3
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 4.0e-55 218.0 124 90.3
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 4.2e-49 198.0 125 84.8
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 5.7e-46 187.6 125 81.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.7e-45 186.0 124 79.8
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 6.3e-45 184.1 125 80.8
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-44 182.6 124 80.6
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.8e-44 182.6 124 80.6
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 3.1e-44 181.8 125 80.8
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 1.2e-43 179.9 125 78.4
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.3e-42 176.4 126 77.8
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 8.5e-42 173.7 126 76.2
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 8.0e-40 167.2 124 73.4
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 2.4e-36 155.6 145 60.0
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.6e-27 126.3 130 59.2
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.9e-25 119.4 107 67.3
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.6e-24 116.3 92 71.7
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.6e-24 116.3 125 56.0
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 2.8e-24 115.5 126 57.1
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 3.6e-24 115.2 101 69.3
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 8.0e-24 114.0 126 55.6
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.8e-23 112.8 125 54.4
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 3.1e-23 112.1 124 54.8
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 4.0e-23 111.7 127 55.1
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 5.2e-23 111.3 125 56.8
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 6.8e-23 110.9 126 54.8
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.8e-23 110.9 126 54.8
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.8e-23 110.9 126 54.8
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 6.8e-23 110.9 125 54.4
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.2e-22 110.2 127 52.8
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.5e-22 109.8 128 55.5
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.7e-21 106.3 126 52.4
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.7e-21 106.3 127 52.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 1.7e-21 106.3 126 50.8
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.2e-21 105.9 124 50.0
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.2e-21 105.9 126 54.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.9e-21 105.5 125 52.8
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.9e-21 105.5 121 51.2
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.9e-21 105.5 124 51.6
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 3.7e-21 105.1 124 51.6
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.7e-21 105.1 129 53.5
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 4.9e-21 104.8 129 53.5
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 4.9e-21 104.8 126 52.4
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 6.4e-21 104.4 124 50.0
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 8.3e-21 104.0 128 49.2
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.9e-20 102.8 127 52.0
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 7.0e-20 100.9 125 51.2
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 9.2e-20 100.5 125 50.4
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 9.2e-20 100.5 129 49.6
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.2e-19 100.1 136 46.3
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.2e-19 100.1 123 48.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.6e-19 99.8 126 49.2
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.0e-19 99.4 127 51.2
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.7e-19 99.0 125 49.6
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 6.0e-19 97.8 127 48.0
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.0e-18 97.1 126 49.2
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.3e-18 96.7 149 43.6
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.3e-18 96.7 136 44.9
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.3e-18 95.9 123 46.3
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 3.9e-18 95.1 123 51.2
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 5.0e-18 94.7 126 47.6
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 6.6e-18 94.4 136 44.1
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 6.6e-18 94.4 126 48.4
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 6.6e-18 94.4 117 49.6
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 8.6e-18 94.0 126 44.4
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 1.1e-17 93.6 121 48.8
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.5e-17 93.2 126 48.4
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.5e-17 93.2 123 52.8
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.9e-17 92.8 125 47.2
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 3.3e-17 92.0 129 41.9
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 5.6e-17 91.3 127 44.9
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 9.5e-17 90.5 131 45.0
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.2e-16 90.1 128 46.1
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.2e-16 90.1 126 46.8
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.8e-16 89.0 124 44.4
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 3.6e-16 88.6 137 44.5
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 6.2e-16 87.8 131 43.5
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 6.2e-16 87.8 125 46.4
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.8e-15 86.3 127 48.0
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.8e-15 86.3 124 41.9
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 2.3e-15 85.9 130 46.9
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 5.2e-15 84.7 117 50.4
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 5.2e-15 84.7 117 48.7
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 5.2e-15 84.7 119 47.1
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.5e-14 83.2 125 44.8
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 2.6e-14 82.4 128 43.8
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.6e-14 82.4 127 43.3
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 3.4e-14 82.0 117 48.7
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.4e-14 82.0 125 43.2
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.4e-14 82.0 125 44.0
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 3.4e-14 82.0 127 43.3
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.3e-13 80.1 127 45.7
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 1.3e-13 80.1 145 37.9
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.9e-13 79.0 117 43.6
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.7e-13 78.6 125 41.6
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.4e-12 76.6 126 41.3
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 4.1e-12 75.1 49 73.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 5.4e-12 74.7 133 42.1
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 5.4e-12 74.7 121 39.7
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 7.1e-12 74.3 126 42.9
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 9.2e-12 73.9 124 42.7
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 2.7e-11 72.4 130 38.5
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 6.0e-11 71.2 121 42.1
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 3.3e-09 65.5 116 44.8
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 5.6e-09 64.7 102 44.1
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 5.6e-09 64.7 136 36.8
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 9.5e-09 63.9 125 38.4
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 2.1e-08 62.8 92 47.8
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 3.6e-08 62.0 48 60.4
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 8.1e-08 60.8 95 45.3
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.4e-07 60.1 112 38.4
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 5.2e-07 58.2 94 44.7


User provided reference genes

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