Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1229.5 668 100.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1176.0 673 92.4
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1169.8 683 91.2
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1155.2 683 90.8
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 0.0e+00 1146.0 702 87.5
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 0.0e+00 1091.6 682 85.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 6.1e-307 1057.0 683 82.9
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.4e-306 1055.8 646 91.5
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 5.7e-305 1050.4 683 82.4
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.7e-304 1048.9 671 83.5
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.6e-284 980.7 686 75.7
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.8e-258 896.0 694 73.2
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.8e-258 896.0 694 73.2
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.8e-258 896.0 694 73.2
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.1e-252 876.7 698 68.6
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.2e-235 817.8 549 82.3
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 5.7e-220 768.1 755 56.4
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.6e-219 766.5 740 56.8
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.8e-219 765.0 740 56.5
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.4e-218 762.7 740 56.5
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 6.9e-218 761.1 697 59.0
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 2.9e-216 755.7 688 60.0
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.1e-214 749.6 754 55.3
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 3.0e-213 745.7 743 56.0
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 6.7e-213 744.6 755 53.8
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.5e-212 743.4 726 56.5
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.8e-211 738.4 762 54.3
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.1e-210 737.3 733 55.1
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 3.1e-210 735.7 757 54.8
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 4.1e-210 735.3 699 56.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.2e-209 733.8 742 55.4
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.0e-209 733.0 765 53.9
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 4.5e-209 731.9 735 55.8
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.0e-208 730.7 750 55.2
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-208 730.3 762 53.5
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.9e-208 729.2 730 55.1
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.8e-208 728.8 746 54.3
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.5e-207 726.1 763 53.5
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.2e-207 725.7 724 55.0
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.2e-206 723.8 736 53.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 3.6e-206 722.2 740 53.9
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 6.1e-206 721.5 737 53.9
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.4e-205 720.3 785 51.7
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 3.0e-205 719.2 793 52.3
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 3.9e-205 718.8 731 54.3
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 3.9e-205 718.8 731 54.3
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 6.7e-205 718.0 740 54.1
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.5e-204 716.8 731 54.3
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 4.4e-204 715.3 765 52.8
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 5.7e-204 714.9 751 53.0
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 7.4e-204 714.5 747 53.3
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 9.7e-204 714.1 735 54.4
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.2e-203 713.0 680 55.9
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 3.7e-203 712.2 711 54.9
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 4.8e-203 711.8 736 53.1
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 8.2e-203 711.1 754 52.9
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.8e-202 709.9 738 53.3
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 4.1e-202 708.8 764 52.2
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 9.1e-202 707.6 799 52.2
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 9.1e-202 707.6 768 53.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.5e-201 706.8 720 55.7
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.0e-201 706.4 484 81.8
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.6e-201 706.1 756 53.2
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 4.5e-201 705.3 757 53.8
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 3.8e-200 702.2 737 52.2
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 6.5e-200 701.4 765 52.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.2e-198 697.2 767 52.7
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 3.6e-198 695.7 741 51.7
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 3.6e-198 695.7 732 53.3
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 8.0e-198 694.5 738 52.3
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 2.3e-197 693.0 732 53.1
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.9e-197 692.2 722 52.9
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 5.2e-197 691.8 754 52.0
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.1e-196 690.6 752 51.3
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 2.6e-196 689.5 767 51.4
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.4e-196 688.7 789 50.1
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.7e-195 686.8 702 53.3
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.4e-194 683.7 755 51.4
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.2e-193 680.6 668 55.5
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.6e-193 679.5 685 53.3
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 9.4e-191 671.0 746 50.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.5e-188 663.7 814 49.3
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.5e-188 661.4 451 76.3
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.7e-184 650.2 760 48.6
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 7.2e-183 644.8 752 49.3
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.0e-181 641.0 752 48.9
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.7e-180 635.2 688 51.7
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.2e-179 633.3 782 46.0
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 9.1e-178 627.9 721 50.2
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.6e-177 627.1 716 50.8
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 7.7e-177 624.8 763 46.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 6.6e-176 621.7 769 47.2
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.1e-175 620.9 721 50.1
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 5.7e-172 608.6 710 46.9
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 3.1e-170 602.8 718 48.9
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 6.1e-166 588.6 917 41.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 5.8e-156 555.4 714 45.8
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 8.1e-150 535.0 655 46.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.8e-149 533.9 434 63.4
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.9e-147 526.6 633 49.4
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.9e-147 525.8 621 48.3
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 4.0e-141 506.1 737 38.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.7e-139 500.7 682 41.5
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 9.6e-135 485.0 835 36.3
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 2.4e-133 480.3 397 63.0
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.3e-131 474.6 522 51.9
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.5e-124 451.1 599 45.2
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.5e-124 451.1 416 53.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.9e-106 391.0 503 48.9
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.0e-96 358.6 494 46.0
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 5.1e-96 356.3 260 66.2
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.5e-82 311.6 586 36.9
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 4.4e-79 300.1 480 41.5
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.0e-67 262.3 352 42.9
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 2.5e-66 257.7 194 67.0
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.3e-54 218.8 173 64.7
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 6.3e-54 216.5 185 63.2
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.6e-42 176.8 118 68.6
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.0e-39 168.3 136 66.2
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.6e-39 167.9 143 58.0
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 2.6e-39 167.9 141 58.2
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.4e-39 167.2 141 58.9
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.4e-37 161.4 126 59.5
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 4.6e-36 157.1 143 53.8
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 8.6e-35 152.9 91 84.6
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.1e-32 146.0 99 66.7
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-32 144.8 97 72.2
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 3.1e-32 144.4 92 75.0
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 9.9e-31 139.4 692 24.9
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.9e-26 125.2 86 64.0
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-25 120.6 158 39.9
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.6e-23 113.2 103 59.2
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.2e-21 107.8 74 63.5
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 6.6e-19 100.1 207 32.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.3e-17 95.9 536 22.2
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 8.1e-17 93.2 158 34.8
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 4.0e-16 90.9 290 27.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-09 69.3 58 56.9
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.4e-07 61.2 45 55.6


User provided reference genes

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