Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 1.1e-217 759.6 381 100.0
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 9.2e-175 617.1 367 86.6
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 9.9e-169 597.0 308 98.1
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 8.3e-168 594.0 321 94.1
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.5e-164 583.2 314 94.6
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 2.6e-161 572.4 368 79.6
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 1.9e-159 566.2 367 78.5
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 6.6e-157 557.8 307 89.9
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 3.3e-156 555.4 363 77.7
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 1.2e-155 553.5 307 89.3
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 4.4e-153 545.0 319 86.5
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 2.5e-148 529.3 307 86.3
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 4.3e-148 528.5 307 86.0
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 5.3e-146 521.5 307 85.3
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 2.7e-142 509.2 311 83.0
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 7.4e-140 501.1 285 86.3
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.6e-139 500.0 282 87.6
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 4.3e-132 475.3 279 85.3
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 1.5e-113 413.7 321 59.5
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 1.5e-113 413.7 355 59.4
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 7.7e-113 411.4 302 66.9
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 1.3e-112 410.6 329 62.9
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 1.7e-112 410.2 308 62.7
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 3.8e-112 409.1 321 61.7
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 5.0e-112 408.7 326 60.4
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 4.2e-111 405.6 291 64.3
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 1.6e-110 403.7 353 56.9
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 2.7e-110 402.9 320 59.7
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 3.6e-110 402.5 291 63.9
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 3.9e-109 399.1 303 63.4
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 2.6e-108 396.4 313 60.7
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 5.7e-108 395.2 297 62.6
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 5.7e-108 395.2 315 58.4
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.3e-107 394.0 324 58.0
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 3.7e-107 392.5 337 59.3
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 3.7e-107 392.5 303 60.7
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.1e-106 391.0 291 62.5
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 2.4e-106 389.8 340 57.9
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 4.1e-106 389.0 319 61.1
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 5.3e-106 388.7 307 59.9
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 2.0e-105 386.7 288 63.5
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 2.2e-104 383.3 320 58.1
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 8.5e-104 381.3 343 53.6
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 2.5e-103 379.8 320 58.4
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 7.2e-103 378.3 300 60.3
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 2.7e-102 376.3 299 58.2
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 2.7e-102 376.3 330 55.8
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 4.7e-102 375.6 305 60.7
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 1.8e-101 373.6 305 56.7
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 3.0e-101 372.9 279 65.2
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 1.5e-100 370.5 288 61.8
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 4.4e-100 369.0 305 58.4
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.7e-99 365.9 297 59.3
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.8e-99 365.5 297 59.6
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 6.3e-99 365.2 318 56.6
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 1.1e-98 364.4 324 55.2
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 4.1e-98 362.5 314 56.4
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 5.3e-98 362.1 345 53.0
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.0e-97 360.1 297 58.2
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 1.7e-96 357.1 298 55.4
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 3.2e-95 352.8 297 56.2
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.6e-94 350.5 343 51.6
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 8.0e-94 348.2 278 57.9
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 1.4e-93 347.4 266 61.7
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 4.0e-93 345.9 291 56.7
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 4.4e-92 342.4 304 56.2
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 4.8e-91 339.0 463 42.1
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 2.4e-90 336.7 320 51.2
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 4.1e-90 335.9 306 54.9
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.7e-88 330.5 236 64.8
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 8.5e-88 328.2 260 58.8
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 4.7e-86 322.4 343 52.5
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 6.1e-86 322.0 324 52.5
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.0e-85 321.2 389 44.7
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 2.3e-85 320.1 329 49.8
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 3.0e-85 319.7 256 59.0
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 4.0e-85 319.3 295 53.2
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 2.6e-84 316.6 305 50.8
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 3.4e-84 316.2 238 62.6
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 5.7e-84 315.5 248 61.3
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 3.1e-82 309.7 282 52.5
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 2.3e-80 303.5 349 49.0
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.6e-80 302.0 262 56.9
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 2.8e-78 296.6 320 46.6
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 5.2e-77 292.4 232 58.6
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 2.8e-75 286.6 231 63.2
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 2.3e-72 276.9 281 48.4
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.5e-71 274.2 234 55.6
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 3.7e-67 259.6 326 44.2
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 5.4e-66 255.8 306 43.5
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.2e-65 254.6 203 60.6
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.6e-65 254.2 206 59.2
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 5.0e-64 249.2 133 92.5
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.5e-63 247.7 194 61.3
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 2.6e-52 210.3 174 59.2
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 2.2e-51 207.2 144 68.1
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 4.6e-49 199.5 195 52.3
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 3.0e-48 196.8 283 42.0
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 6.2e-46 189.1 309 38.5
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.8e-45 187.6 195 49.7
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 2.4e-45 187.2 144 61.8
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 2.1e-41 174.1 103 72.8
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 2.7e-41 173.7 450 31.3
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 4.6e-41 172.9 141 57.4
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 2.3e-40 170.6 306 32.7
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.1e-39 168.3 136 55.9
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 9.0e-37 158.7 181 42.0
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 5.8e-36 156.0 79 89.9
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 2.7e-33 147.1 88 72.7
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 1.6e-30 137.9 103 56.3
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 4.0e-29 133.3 140 52.1
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 4.9e-27 126.3 263 31.2
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 3.2e-26 123.6 92 55.4
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 2.7e-25 120.6 75 70.7
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.1e-21 108.6 347 28.0
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 3.4e-20 103.6 291 29.2
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 3.3e-15 87.0 73 54.8
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 8.7e-08 62.4 43 60.5
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 9.7e-07 58.9 47 57.4
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 9.7e-07 58.9 44 56.8


User provided reference genes

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