Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 2.2e-120 435.6 223 100.0
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 5.9e-113 411.0 230 93.9
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 3.7e-107 391.7 215 94.4
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 9.1e-106 387.1 217 93.5
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 4.8e-91 338.2 207 85.5
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 3.1e-90 335.5 212 84.9
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 4.5e-89 331.6 210 83.3
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 7.2e-87 324.3 204 81.4
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 3.0e-85 318.9 206 81.6
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 1.4e-82 310.1 212 77.8
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 2.4e-82 309.3 205 80.0
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.5e-76 290.0 211 72.5
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 5.2e-61 238.4 191 63.4
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 5.8e-60 235.0 212 58.0
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 1.3e-59 233.8 174 66.7
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.3e-59 233.8 203 60.6
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 2.2e-59 233.0 203 60.1
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 3.7e-59 232.3 203 60.1
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.7e-59 232.3 239 55.6
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 4.9e-59 231.9 195 64.1
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 8.3e-59 231.1 191 60.7
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 1.1e-58 230.7 162 67.3
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.4e-58 230.3 207 59.4
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 3.2e-58 229.2 170 65.3
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 4.1e-58 228.8 177 61.6
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 2.0e-57 226.5 195 60.5
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 3.5e-57 225.7 152 70.4
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 4.6e-57 225.3 186 60.2
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 6.0e-57 224.9 192 59.9
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 6.0e-57 224.9 206 56.8
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 1.0e-56 224.2 204 59.3
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 2.3e-56 223.0 207 58.5
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.3e-56 223.0 145 72.4
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 3.9e-56 222.2 177 62.1
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 5.0e-56 221.9 211 57.3
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 5.0e-56 221.9 163 66.9
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 6.6e-56 221.5 196 59.2
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 6.6e-56 221.5 151 68.2
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.6e-56 221.5 145 72.4
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.9e-55 219.9 210 58.6
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.5e-55 219.5 207 57.0
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 2.5e-55 219.5 208 56.2
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 3.3e-55 219.2 178 61.8
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 3.3e-55 219.2 208 56.2
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 4.3e-55 218.8 151 69.5
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 4.3e-55 218.8 151 69.5
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 4.3e-55 218.8 198 59.1
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 7.3e-55 218.0 153 64.7
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 9.5e-55 217.6 160 63.8
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.2e-54 217.2 206 54.4
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.2e-54 217.2 191 58.6
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 2.1e-54 216.5 151 68.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 2.8e-54 216.1 155 66.5
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 3.6e-54 215.7 187 59.4
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 6.2e-54 214.9 164 60.4
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 6.2e-54 214.9 162 65.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 6.2e-54 214.9 144 69.4
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 8.1e-54 214.5 187 58.8
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.4e-53 213.8 204 55.9
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.4e-53 213.8 213 53.1
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.8e-53 213.4 164 61.0
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.8e-53 213.4 208 55.3
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.3e-53 213.0 168 62.5
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 5.2e-53 211.8 157 63.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.6e-52 209.5 205 54.6
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 3.4e-52 209.1 205 54.1
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 5.8e-52 208.4 176 62.5
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.5e-52 208.0 178 59.6
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.5e-52 208.0 178 59.6
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 7.5e-52 208.0 178 58.4
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 7.5e-52 208.0 197 56.3
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.7e-51 206.8 178 59.0
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 2.9e-51 206.1 175 57.7
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.9e-51 205.3 176 59.1
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.4e-50 203.8 208 54.3
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 1.9e-50 203.4 197 53.8
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 9.2e-50 201.1 131 72.5
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.1e-49 199.9 197 52.8
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 4.6e-49 198.7 152 60.5
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 6.0e-49 198.4 153 61.4
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 3.0e-48 196.1 137 63.5
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 4.3e-47 192.2 143 62.2
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.2e-44 184.1 162 57.4
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 2.0e-44 183.3 204 50.0
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 2.6e-44 183.0 151 59.6
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.1e-42 177.6 195 52.3
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 1.9e-42 176.8 149 60.4
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 3.9e-40 169.1 200 48.0
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 3.9e-40 169.1 200 48.0
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 8.6e-40 167.9 143 58.7
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 3.3e-39 166.0 114 67.5
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 1.2e-38 164.1 162 53.7
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 7.6e-36 154.8 139 56.8
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 2.9e-35 152.9 149 50.3
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 5.4e-34 148.7 89 76.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.9e-31 140.2 143 49.0
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 2.4e-26 123.2 200 36.5
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 3.3e-23 112.8 117 48.7
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.4e-21 107.5 182 35.2
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 1.4e-21 107.5 73 68.5
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 4.0e-21 105.9 118 48.3
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 4.3e-15 85.9 146 28.8
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.7e-11 73.9 148 30.4
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.4e-10 70.9 158 27.8
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.2e-10 69.3 86 45.3
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 9.3e-10 68.2 210 30.5
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 1.2e-09 67.8 50 64.0
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 7.9e-09 65.1 43 69.8
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.0e-08 63.2 44 65.9
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 8.7e-08 61.6 45 64.4
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.3e-07 59.7 43 58.1
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.6e-06 57.4 40 55.0


User provided reference genes

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