Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 2.7e-46 188.3 99 100.0
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 2.6e-44 181.8 105 94.3
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 2.2e-35 152.1 106 79.2
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 4.9e-35 151.0 106 79.2
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 9.2e-34 146.7 106 76.4
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 2.0e-33 145.6 107 76.6
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 2.7e-33 145.2 106 77.4
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 7.3e-31 137.1 89 85.4
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.4e-29 132.9 106 67.9
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.5e-28 129.4 105 68.6
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 2.9e-27 125.2 116 62.9
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.9e-27 124.4 103 67.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 4.9e-27 124.4 103 67.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.2e-26 121.7 103 66.0
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 2.5e-23 112.1 67 88.1
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 3.3e-23 111.7 102 63.7
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 4.3e-23 111.3 67 86.6
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 4.3e-23 111.3 69 82.6
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.2e-22 109.8 116 56.9
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 6.2e-22 107.5 74 81.1
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 8.0e-22 107.1 116 53.4
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 8.0e-22 107.1 74 81.1
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 8.0e-22 107.1 116 53.4
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 8.0e-22 107.1 74 81.1
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 1.5e-20 102.8 116 52.6
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 2.6e-20 102.1 97 64.9
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.7e-19 99.4 108 59.3
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.9e-19 98.6 103 51.5
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 8.3e-19 97.1 92 64.1
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 8.3e-19 97.1 100 52.0
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 4.1e-18 94.7 116 50.0
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.0e-16 90.1 103 47.6
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 6.6e-16 87.4 94 53.2
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.6e-15 84.3 106 46.2
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 6.2e-14 80.9 108 46.3
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 8.1e-14 80.5 108 44.4
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 4.0e-13 78.2 105 40.0
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.0e-13 78.2 109 44.0
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 4.4e-12 74.7 104 42.3
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 1.7e-11 72.8 54 74.1
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.7e-11 72.8 97 43.3
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.7e-11 72.8 104 39.4
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 2.9e-11 72.0 109 43.1
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 6.4e-11 70.9 102 42.2
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-10 70.1 42 90.5
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 1.4e-10 69.7 109 40.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.4e-10 68.9 103 41.7
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 4.1e-10 68.2 108 41.7
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 5.4e-10 67.8 108 40.7
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 7.1e-10 67.4 107 40.2
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.6e-09 66.2 105 37.1
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.7e-09 65.5 109 40.4
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 3.5e-09 65.1 108 37.0
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 7.8e-09 63.9 100 37.0
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-08 62.8 108 39.8
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 3.9e-08 61.6 100 38.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-08 61.6 103 39.8
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.9e-08 61.6 109 39.4
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 6.6e-08 60.8 103 38.8
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 6.6e-08 60.8 100 33.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.1e-07 60.1 103 36.9
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.5e-07 59.7 103 39.8
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-07 59.7 98 40.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.9e-07 59.3 103 36.9
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 2.5e-07 58.9 100 35.0
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.5e-07 58.9 109 38.5
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 3.3e-07 58.5 105 38.1
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.3e-07 58.5 105 39.0
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 3.3e-07 58.5 108 35.2
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 4.3e-07 58.2 103 39.8
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 5.6e-07 57.8 107 36.4
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 5.6e-07 57.8 100 38.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.6e-07 57.8 105 33.3
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 7.3e-07 57.4 102 37.3
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.3e-07 57.4 98 39.8
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.3e-07 57.4 98 39.8
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.3e-07 57.4 98 39.8
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 9.5e-07 57.0 102 37.3
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.2e-06 56.6 106 34.0
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 1.6e-06 56.2 103 33.0
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.1e-06 55.8 95 37.9
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 2.1e-06 55.8 104 31.7
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 2.1e-06 55.8 101 34.7
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.8e-06 55.5 99 33.3
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.8e-06 55.5 100 34.0
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.6e-06 55.1 109 34.9
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 8.1e-06 53.9 98 34.7


User provided reference genes

Program Settings