Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-234 816.2 418 100.0
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.1e-221 773.1 403 98.8
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.7e-206 722.6 406 92.4
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 2.9e-206 721.8 406 92.1
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.1e-205 719.9 406 91.9
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.5e-189 666.4 406 85.7
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.6e-186 655.6 406 83.7
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.3e-185 653.3 406 83.7
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 6.3e-185 651.0 400 84.8
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.8e-184 649.4 392 85.5
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.4e-184 649.0 392 85.5
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.7e-182 642.9 400 84.2
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 9.4e-181 637.1 415 82.7
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.5e-173 613.2 411 79.8
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 6.4e-161 571.2 358 83.5
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 4.9e-153 545.0 422 71.8
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.7e-143 512.7 345 79.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.6e-130 469.5 386 66.1
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-129 467.2 410 62.2
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 2.9e-129 466.1 401 62.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-129 466.1 390 64.6
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.8e-129 465.7 390 64.9
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 4.2e-128 462.2 399 62.4
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.1e-127 459.9 401 63.1
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.5e-127 459.1 428 61.0
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 4.6e-127 458.8 414 61.4
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.3e-126 457.2 399 63.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.3e-126 457.2 401 64.1
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.3e-126 456.4 401 62.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.0e-126 456.1 415 61.4
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.5e-125 453.8 422 59.7
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 5.6e-125 451.8 416 60.1
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 6.2e-124 448.4 425 58.8
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 8.1e-124 448.0 419 58.9
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 8.1e-124 448.0 399 62.7
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.1e-123 446.0 404 60.6
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 3.1e-123 446.0 404 60.1
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.0e-122 443.4 364 66.5
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 4.5e-122 442.2 398 61.6
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 3.8e-121 439.1 417 60.0
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.1e-120 437.6 376 62.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.4e-120 437.2 414 58.0
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.9e-120 436.8 409 59.4
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.4e-120 435.3 416 57.2
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 9.3e-120 434.5 460 54.1
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 6.7e-118 428.3 366 61.5
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 8.7e-118 427.9 401 56.6
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 3.3e-117 426.0 396 58.8
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 7.4e-117 424.9 418 56.0
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 9.6e-117 424.5 396 57.8
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 9.6e-117 424.5 396 58.6
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.6e-116 423.7 394 58.9
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.6e-116 423.7 340 68.5
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.6e-116 423.7 396 59.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.8e-116 422.9 416 56.2
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.8e-116 422.9 399 59.1
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 6.2e-116 421.8 438 54.1
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.8e-115 420.2 394 59.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 2.4e-115 419.9 415 54.9
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.1e-115 419.5 426 56.1
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 4.0e-115 419.1 397 58.2
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 2.0e-114 416.8 415 54.5
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.4e-114 416.0 410 56.3
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 5.8e-114 415.2 389 60.7
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 5.8e-114 415.2 419 55.4
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 9.9e-114 414.5 368 64.7
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.3e-113 414.1 404 59.7
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.3e-113 414.1 393 56.5
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.9e-113 412.9 440 55.9
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 8.4e-113 411.4 408 55.6
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.4e-112 409.8 435 55.6
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 3.2e-112 409.5 430 54.0
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 5.5e-112 408.7 393 59.0
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 7.1e-112 408.3 394 56.9
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 9.3e-112 407.9 397 56.9
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.6e-111 407.1 410 56.6
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.9e-109 400.2 346 60.4
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 5.6e-109 398.7 428 56.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.3e-108 397.5 409 53.8
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.1e-108 396.7 327 67.9
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 4.8e-108 395.6 399 56.4
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.4e-107 393.3 382 55.8
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 9.0e-107 391.3 372 58.6
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.4e-106 389.4 391 55.2
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-105 387.5 411 54.0
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 8.4e-105 384.8 432 51.9
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 3.2e-104 382.9 346 59.2
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.6e-103 380.6 444 52.7
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.3e-102 376.7 425 52.7
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.7e-102 375.2 379 55.4
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.3e-101 372.5 327 61.2
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 4.8e-100 369.0 410 52.7
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 5.9e-98 362.1 418 51.9
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.7e-97 360.5 411 51.3
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 8.5e-97 358.2 405 52.8
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.4e-96 357.5 325 62.5
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 5.5e-96 355.5 345 58.8
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.8e-94 350.5 414 51.2
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.1e-91 339.7 284 68.0
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 3.1e-91 339.7 348 56.0
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-89 334.7 283 67.1
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.5e-88 328.9 419 48.4
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 9.4e-88 328.2 332 56.3
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.6e-87 327.4 319 58.6
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.9e-87 325.1 282 66.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 4.4e-85 319.3 378 51.6
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.7e-84 317.4 295 60.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.3e-83 312.4 297 58.6
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 9.1e-83 311.6 451 47.0
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-72 277.7 362 47.5
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.4e-59 234.6 206 59.7
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.5e-58 229.6 378 39.4
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.4e-51 207.2 433 35.1
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.3e-46 190.7 128 77.3
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 9.2e-43 178.7 131 70.2
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 9.2e-43 178.7 317 38.2
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.3e-41 174.1 124 71.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.5e-40 171.4 410 32.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.9e-32 144.4 99 79.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.9e-25 120.2 88 75.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 4.0e-22 110.2 103 56.3
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.3e-16 90.1 95 58.9
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.8e-15 87.4 93 55.9
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.4e-13 80.5 113 38.1
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 5.8e-13 79.7 64 59.4
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 9.9e-13 79.0 153 37.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.5e-08 65.1 106 39.6


User provided reference genes

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