Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 2.2e-76 288.9 143 100.0
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 1.3e-41 173.3 88 97.7
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 3.0e-38 162.2 135 69.6
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 1.5e-29 133.3 79 83.5
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 2.6e-29 132.5 79 83.5
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 9.8e-29 130.6 79 79.7
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 9.8e-29 130.6 79 82.3
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 4.9e-28 128.3 79 79.7
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 6.4e-28 127.9 79 78.5
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 6.4e-28 127.9 79 75.9
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 8.3e-28 127.5 77 83.1
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 1.1e-27 127.1 79 79.7
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 9.2e-27 124.0 79 77.2
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 1.5e-24 116.7 79 70.9
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 3.6e-23 112.1 79 69.6
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 9.2e-19 97.4 76 61.8
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.2e-18 97.1 76 63.2
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 1.2e-18 97.1 76 64.5
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.6e-18 96.7 76 64.5
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.6e-18 96.7 79 62.0
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 2.7e-18 95.9 76 63.2
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 3.5e-18 95.5 134 42.5
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 3.5e-18 95.5 76 59.2
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 3.5e-18 95.5 85 57.6
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 1.0e-17 94.0 76 56.6
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.0e-17 94.0 76 60.5
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.0e-17 94.0 76 60.5
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 1.0e-17 94.0 76 60.5
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 1.3e-17 93.6 78 59.0
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 1.3e-17 93.6 76 61.8
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 1.3e-17 93.6 79 60.8
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 1.3e-17 93.6 76 59.2
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.7e-17 93.2 76 60.5
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 1.7e-17 93.2 76 59.2
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.3e-17 92.8 76 61.8
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 2.3e-17 92.8 119 46.2
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 2.3e-17 92.8 76 57.9
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 3.0e-17 92.4 76 55.3
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 3.0e-17 92.4 113 46.0
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 3.9e-17 92.0 94 50.0
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 5.0e-17 91.7 76 53.9
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 1.1e-16 90.5 76 59.2
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 1.1e-16 90.5 76 55.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 1.5e-16 90.1 76 57.9
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 1.9e-16 89.7 76 52.6
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 1.9e-16 89.7 76 59.2
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.9e-16 89.7 105 48.6
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 2.5e-16 89.4 80 52.5
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 2.5e-16 89.4 76 57.9
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 2.5e-16 89.4 76 56.6
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.5e-16 89.4 85 54.1
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 3.3e-16 89.0 76 55.3
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 3.3e-16 89.0 76 57.9
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 3.3e-16 89.0 76 53.9
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 3.3e-16 89.0 147 40.1
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 4.3e-16 88.6 72 58.3
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 4.3e-16 88.6 76 50.0
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 4.3e-16 88.6 76 53.9
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 5.6e-16 88.2 78 56.4
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 5.6e-16 88.2 78 56.4
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 5.6e-16 88.2 76 51.3
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 5.6e-16 88.2 82 51.2
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 7.3e-16 87.8 82 51.2
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 7.3e-16 87.8 76 57.9
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 9.5e-16 87.4 76 51.3
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 9.5e-16 87.4 77 57.1
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 9.5e-16 87.4 78 56.4
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 9.5e-16 87.4 106 43.4
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 1.2e-15 87.0 76 56.6
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 1.2e-15 87.0 74 58.1
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 1.2e-15 87.0 76 56.6
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 1.2e-15 87.0 76 56.6
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 1.6e-15 86.7 103 49.5
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.1e-15 86.3 76 52.6
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 2.1e-15 86.3 76 55.3
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 2.1e-15 86.3 76 51.3
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 2.8e-15 85.9 76 56.6
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 2.8e-15 85.9 76 55.3
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.8e-15 85.9 76 56.6
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 2.8e-15 85.9 76 55.3
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 2.8e-15 85.9 76 50.0
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 3.6e-15 85.5 76 56.6
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 3.6e-15 85.5 76 56.6
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 4.7e-15 85.1 76 52.6
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 6.2e-15 84.7 76 52.6
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 6.2e-15 84.7 72 55.6
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 6.2e-15 84.7 72 55.6
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 6.2e-15 84.7 76 50.0
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 8.1e-15 84.3 76 52.6
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 8.1e-15 84.3 76 51.3
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 8.1e-15 84.3 76 53.9
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 8.1e-15 84.3 78 50.0
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 8.1e-15 84.3 76 50.0
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 8.1e-15 84.3 79 53.2
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 8.1e-15 84.3 76 55.3
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.3e-14 82.8 76 53.9
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 2.3e-14 82.8 76 53.9
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 3.1e-14 82.4 76 53.9
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.1e-14 82.4 78 52.6
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 3.1e-14 82.4 76 53.9
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 3.1e-14 82.4 76 53.9
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 3.1e-14 82.4 76 50.0
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 4.0e-14 82.0 69 59.4
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 4.0e-14 82.0 69 55.1
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 4.0e-14 82.0 76 53.9
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 8.9e-14 80.9 72 52.8
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.2e-13 80.5 76 51.3
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 1.5e-13 80.1 69 52.2
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 2.0e-13 79.7 121 39.7
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 3.4e-13 79.0 79 50.6
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 5.8e-13 78.2 86 45.3
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 9.9e-13 77.4 76 50.0
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 3.7e-12 75.5 79 44.3
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 1.4e-11 73.6 76 46.1
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.4e-11 73.6 69 52.2
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.4e-11 73.6 69 52.2
C03p43760 Brassica napus HOM05D005668 ORTHO05D007082 3.5e-10 68.9 34 94.1
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 4.6e-10 68.6 64 51.6
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 5.1e-09 65.1 77 41.6
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 1.9e-08 63.2 71 43.7
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.6e-07 60.1 50 54.0
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 1.4e-06 57.0 123 34.1


User provided reference genes

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