Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 5.7e-42 173.7 80 100.0
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 8.2e-41 169.9 80 96.2
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 6.3e-33 143.7 80 85.0
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 1.1e-32 142.9 82 82.9
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 9.7e-26 119.8 81 75.3
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 1.7e-25 119.0 81 74.1
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 1.7e-25 119.0 81 74.1
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 1.7e-25 119.0 81 74.1
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 1.7e-25 119.0 81 74.1
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.8e-25 117.5 79 75.9
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 1.1e-24 116.3 81 72.8
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 1.8e-24 115.5 81 71.6
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 1.8e-24 115.5 81 71.6
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 9.1e-24 113.2 79 73.4
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 3.4e-23 111.3 80 71.2
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 2.2e-22 108.6 79 70.9
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 2.2e-22 108.6 79 70.9
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.9e-22 108.2 80 72.5
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 3.8e-22 107.8 79 69.6
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 3.8e-22 107.8 79 69.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 6.5e-22 107.1 80 70.0
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.1e-21 106.3 80 71.2
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 1.9e-21 105.5 78 70.5
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 2.5e-21 105.1 79 68.4
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 4.2e-21 104.4 79 68.4
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 4.2e-21 104.4 79 68.4
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 4.2e-21 104.4 79 68.4
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 9.4e-21 103.2 79 68.4
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 9.4e-21 103.2 79 68.4
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 9.4e-21 103.2 78 67.9
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.1e-20 102.1 81 65.4
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 7.9e-20 100.1 79 68.4
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 1.4e-19 99.4 79 65.8
BcaC09g48081 Brassica carinata HOM05D002269 ORTHO05D002421 4.4e-18 94.4 50 82.0
BolC1t05454H Brassica oleracea HOM05D002269 ORTHO05D002421 4.4e-18 94.4 50 82.0
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 5.7e-18 94.0 80 62.5
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 1.3e-17 92.8 72 69.4
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 1.3e-17 92.8 72 69.4
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 1.3e-17 92.8 72 69.4
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 2.8e-17 91.7 72 68.1
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.4e-16 88.6 80 62.5
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 2.0e-15 85.5 80 58.8
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 5.9e-15 84.0 79 57.0
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 2.9e-14 81.6 80 60.0
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.5e-13 79.3 80 57.5
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.2e-13 78.2 80 57.5
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 5.5e-13 77.4 80 57.5
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.6e-12 74.7 80 56.2
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.6e-12 74.7 78 55.1
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 4.7e-12 74.3 73 53.4
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.4e-11 72.8 79 50.6
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.4e-11 72.8 80 55.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 5.2e-11 70.9 82 52.4
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.8e-11 70.1 81 54.3
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.1e-10 69.7 81 54.3
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 50.6
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.6e-10 68.6 84 47.6
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.6e-10 68.6 82 48.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 2.6e-10 68.6 82 48.8
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 3.3e-10 68.2 79 50.6
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 4.4e-10 67.8 82 48.8
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 7.5e-10 67.0 81 49.4
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 9.7e-10 66.6 81 51.9
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.7e-10 66.6 82 46.3
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 1.3e-09 66.2 83 53.0
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.7e-09 65.9 79 48.1
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.7e-09 65.9 85 49.4
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.7e-09 65.9 79 49.4
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 2.8e-09 65.1 81 51.9
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 2.8e-09 65.1 79 48.1
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.8e-09 65.1 81 51.9
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 2.8e-09 65.1 81 53.1
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 3.7e-09 64.7 80 51.2
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 3.7e-09 64.7 80 50.0
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 3.7e-09 64.7 80 50.0
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 4.8e-09 64.3 79 51.9
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 4.8e-09 64.3 82 48.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 4.8e-09 64.3 79 48.1
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 6.3e-09 63.9 80 47.5
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.3e-09 63.9 81 48.1
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 8.2e-09 63.5 82 48.8
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 79 49.4
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 79 49.4
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 1.1e-08 63.2 79 48.1
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.4e-08 62.8 71 53.5
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 1.4e-08 62.8 79 50.6
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.4e-08 62.8 84 46.4
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.8e-08 62.4 79 46.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.8e-08 62.4 80 47.5
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.8e-08 62.4 82 46.3
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.4e-08 62.0 81 44.4
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.1e-08 61.6 79 46.8
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 3.1e-08 61.6 85 43.5
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 3.1e-08 61.6 79 45.6
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 4.1e-08 61.2 80 47.5
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 4.1e-08 61.2 86 45.3
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 4.1e-08 61.2 83 47.0
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.3e-08 60.8 80 46.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.3e-08 60.8 79 45.6
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.3e-08 60.8 83 44.6
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 5.3e-08 60.8 80 50.0
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 5.3e-08 60.8 79 45.6
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 7.0e-08 60.5 81 49.4
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 7.0e-08 60.5 55 58.2
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.0e-08 60.5 79 49.4
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 7.0e-08 60.5 86 48.8
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 7.0e-08 60.5 80 50.0
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 9.1e-08 60.1 84 47.6
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 1.2e-07 59.7 80 47.5
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.6e-07 59.3 80 47.5
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.6e-07 59.3 80 47.5
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.6e-07 59.3 79 49.4
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.6e-07 59.3 80 46.2
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 2.0e-07 58.9 82 47.6
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.0e-07 58.9 77 48.1
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 2.0e-07 58.9 81 45.7
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.0e-07 58.9 82 47.6
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 80 47.5
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.0e-07 58.9 79 45.6
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.7e-07 58.5 72 44.4
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.7e-07 58.5 72 44.4
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 2.7e-07 58.5 55 50.9
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.7e-07 58.5 80 48.8
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.7e-07 58.5 79 48.1
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 3.5e-07 58.2 81 46.9
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 3.5e-07 58.2 79 41.8
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.5e-07 57.8 79 45.6
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 4.5e-07 57.8 53 50.9
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.5e-07 57.8 79 49.4
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 5.9e-07 57.4 54 53.7
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 5.9e-07 57.4 79 44.3
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.7e-07 57.0 72 44.4
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.0e-06 56.6 81 43.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.0e-06 56.6 79 46.8
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.0e-06 56.6 79 49.4
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.3e-06 56.2 79 44.3
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 1.3e-06 56.2 57 52.6
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 1.3e-06 56.2 83 43.4
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.3e-06 56.2 82 45.1
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 46.8
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.7e-06 55.8 85 44.7
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 45.6
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 46.8
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.7e-06 55.8 81 44.4
HanXRQChr08g0227151 Helianthus annuus HOM05D002160 ORTHO05D002012 2.2e-06 55.5 78 41.0
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 2.2e-06 55.5 46 54.3
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.9e-06 55.1 79 46.8
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.9e-06 55.1 79 46.8
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.9e-06 55.1 79 44.3
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 2.9e-06 55.1 79 43.0
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.8e-06 54.7 80 43.8
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.8e-06 54.7 79 46.8
Zm00001eb124380 Zea mays HOM05D002160 ORTHO05D002012 3.8e-06 54.7 45 55.6
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 5.0e-06 54.3 55 49.1
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 5.0e-06 54.3 80 43.8
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.0e-06 54.3 72 43.1
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 5.0e-06 54.3 80 43.8
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.5e-06 53.9 81 42.0
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 6.5e-06 53.9 82 43.9
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 6.5e-06 53.9 79 43.0
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 6.5e-06 53.9 75 46.7
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 8.5e-06 53.5 80 43.8


User provided reference genes

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