Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 4.3e-161 571.2 286 100.0
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.4e-159 566.2 285 99.3
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 2.0e-153 545.8 285 98.2
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 2.6e-153 545.4 284 98.2
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 9.7e-153 543.5 286 97.6
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.3e-149 533.1 285 93.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.2e-140 500.7 322 80.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 9.1e-135 483.8 301 81.1
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.2e-134 483.4 321 77.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 7.7e-134 480.7 309 79.0
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 7.7e-134 480.7 299 80.6
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 1.5e-132 476.5 309 80.3
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 9.4e-132 473.8 308 78.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.3e-130 469.2 304 78.3
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.2e-129 466.8 318 75.5
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.9e-116 422.9 336 67.3
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 4.0e-114 415.2 344 64.0
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.7e-110 402.5 313 66.1
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 6.0e-110 401.4 314 66.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.7e-109 399.8 311 66.2
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.3e-108 395.6 347 61.7
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 5.6e-108 394.8 217 82.5
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.5e-108 394.0 347 62.2
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 2.1e-107 392.9 334 61.7
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.6e-107 392.1 328 63.4
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.6e-107 392.1 346 62.1
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 6.2e-107 391.3 347 60.2
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.2e-107 391.3 339 61.1
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.4e-106 390.2 325 63.4
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.1e-106 389.0 338 61.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 4.0e-106 388.7 342 59.9
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 5.2e-106 388.3 342 60.2
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 8.9e-106 387.5 342 59.4
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 8.9e-106 387.5 342 59.1
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.2e-105 387.1 344 59.9
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.5e-105 386.7 308 63.3
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.5e-105 386.7 338 61.5
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.0e-105 386.3 334 60.2
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.4e-105 385.2 352 57.4
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 7.5e-105 384.4 335 59.4
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 9.8e-105 384.0 349 58.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.7e-104 383.3 344 59.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.9e-104 382.5 346 59.5
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 4.9e-104 381.7 340 59.4
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 6.4e-104 381.3 343 58.9
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 8.3e-104 380.9 348 58.6
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.1e-103 380.6 345 57.7
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.1e-103 380.6 212 78.3
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.4e-103 380.2 348 58.3
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.4e-103 380.2 347 57.3
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.9e-103 379.8 342 59.4
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.4e-103 379.4 366 55.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 5.4e-103 378.3 347 57.9
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 9.2e-103 377.5 346 57.2
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.1e-102 376.3 348 58.6
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.0e-101 374.0 333 59.8
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-101 373.2 213 77.9
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.0e-101 372.5 313 62.9
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.9e-101 372.1 339 58.4
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.9e-101 372.1 212 75.9
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.9e-101 372.1 341 56.3
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 6.6e-101 371.3 213 77.5
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 6.6e-101 371.3 211 78.2
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.5e-100 370.2 346 57.8
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.5e-100 370.2 318 59.7
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.9e-100 369.8 211 76.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 3.3e-100 369.0 291 66.0
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 3.3e-100 369.0 349 56.2
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 4.3e-100 368.6 340 56.5
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 4.3e-100 368.6 294 65.3
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 4.3e-100 368.6 349 56.2
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 5.6e-100 368.2 211 75.8
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.6e-100 368.2 308 62.7
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 7.3e-100 367.9 333 59.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 7.3e-100 367.9 351 57.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 9.5e-100 367.5 346 56.4
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.6e-99 366.7 289 66.4
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.1e-99 366.3 346 56.1
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 6.2e-99 364.8 344 55.5
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 8.1e-99 364.4 347 56.8
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.4e-98 363.6 211 74.9
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.4e-98 363.6 280 60.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.8e-98 363.2 325 53.2
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.3e-98 362.8 335 57.6
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 2.3e-98 362.8 211 74.4
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.1e-98 362.5 211 74.4
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 4.0e-98 362.1 349 55.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 5.2e-98 361.7 354 56.5
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 6.8e-98 361.3 213 73.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.5e-97 360.1 349 55.3
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.0e-97 359.8 408 49.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-97 359.8 357 54.6
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.4e-97 359.0 313 55.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 3.4e-97 359.0 325 59.1
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 3.4e-97 359.0 327 56.9
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.4e-97 358.6 317 61.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 7.6e-97 357.8 212 73.1
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 7.6e-97 357.8 345 54.5
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.3e-96 357.1 325 59.7
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.9e-96 355.9 345 54.5
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.7e-96 355.5 213 72.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.6e-94 350.1 317 59.0
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-94 350.1 213 70.0
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 6.0e-94 348.2 321 58.9
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 6.6e-93 344.7 330 57.3
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.3e-92 342.4 318 57.5
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 1.6e-91 340.1 326 56.1
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 4.7e-91 338.6 320 57.2
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.4e-90 337.0 189 78.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.4e-90 337.0 320 57.5
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.4e-90 336.3 331 57.4
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.5e-89 333.6 299 59.5
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 2.0e-89 333.2 329 54.1
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 5.8e-89 331.6 191 75.9
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.1e-87 324.7 189 74.1
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.1e-87 324.7 189 74.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.6e-86 323.6 282 63.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 2.7e-86 322.8 186 76.3
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.7e-85 320.1 201 71.1
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 4.0e-82 308.9 260 55.4
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 5.3e-82 308.5 225 59.1
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 9.0e-82 307.8 316 51.9
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.0e-81 306.6 293 53.2
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.4e-81 305.8 280 58.9
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 4.2e-79 298.9 334 50.6
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 9.3e-79 297.7 279 57.7
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.3e-77 293.9 294 56.8
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 3.9e-77 292.4 266 52.3
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.3e-75 287.3 315 53.7
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 2.8e-75 286.2 211 55.9
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 2.8e-75 286.2 267 52.1
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 6.2e-75 285.0 289 55.4
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.4e-74 283.1 241 55.2
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.2e-73 280.8 322 43.8
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.5e-73 280.4 289 54.3
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.4e-71 273.1 312 48.7
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.2e-71 272.3 339 48.7
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 5.5e-71 271.9 310 50.6
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.0e-69 267.7 295 52.2
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 8.7e-69 264.6 312 49.7
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-68 264.2 192 62.0
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.5e-68 263.8 320 48.1
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 5.6e-68 261.9 189 62.4
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.6e-67 260.4 309 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 6.2e-67 258.5 316 46.2
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 2.4e-66 256.5 188 60.6
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 4.0e-66 255.8 189 60.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.0e-66 255.8 298 49.3
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 7.6e-65 251.5 310 42.9
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-64 250.8 223 55.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.5e-64 248.4 194 58.2
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.9e-63 246.9 284 46.8
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.9e-63 246.9 189 59.3
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.9e-60 236.9 288 50.3
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.3e-60 236.1 251 47.0
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 4.3e-52 209.1 205 44.4
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-50 204.5 252 48.4
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 7.7e-49 198.4 182 51.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.7e-48 197.2 208 43.3
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.2e-48 196.8 182 51.6
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-46 189.5 228 42.5
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 4.5e-41 172.6 97 78.4
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.3e-40 171.0 93 79.6
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.3e-40 171.0 97 74.2
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.6e-14 84.3 102 38.2
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 9.8e-12 75.1 38 78.9
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-11 74.3 48 64.6


User provided reference genes

Program Settings