Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p35520 Brassica napus HOM05D000336 ORTHO05D020077 8.1e-73 276.9 137 100.0
A09p03320 Brassica napus HOM05D000336 ORTHO05D002301 1.0e-22 110.5 62 87.1
BraA09t35970Z Brassica rapa HOM05D000336 ORTHO05D002301 1.0e-22 110.5 62 87.1
BcaC06g31001 Brassica carinata HOM05D000336 ORTHO05D002301 1.2e-20 103.6 62 79.0
BcaC06g33838 Brassica carinata HOM05D000336 ORTHO05D002301 8.0e-20 100.9 62 77.4
A06p41330 Brassica napus HOM05D000336 ORTHO05D002301 8.0e-20 100.9 62 77.4
BolC7t44147H Brassica oleracea HOM05D000336 ORTHO05D002301 8.0e-20 100.9 62 77.4
BraA06t27058Z Brassica rapa HOM05D000336 ORTHO05D002301 8.0e-20 100.9 62 77.4
C07p36310 Brassica napus HOM05D000336 ORTHO05D002301 1.4e-19 100.1 62 77.4
BcaB04g19430 Brassica carinata HOM05D000336 ORTHO05D002301 3.0e-19 99.0 62 77.4
Thhalv10003722m.g Eutrema salsugineum HOM05D000336 ORTHO05D002301 1.7e-17 93.2 62 77.4
Sp2g16390 Schrenkiella parvula HOM05D000336 ORTHO05D002301 1.7e-17 93.2 62 77.4
C09p03520 Brassica napus HOM05D000336 ORTHO05D002301 4.5e-15 85.1 45 88.9
vmacro18319 Vaccinium macrocarpon HOM05D000336 ORTHO05D002301 2.9e-14 82.4 62 69.4
BcaC04g23921 Brassica carinata HOM05D000336 ORTHO05D020077 3.8e-14 82.0 46 87.0
RcHm_v2.0_Chr2g0174631 Rosa chinensis HOM05D000336 ORTHO05D002301 5.0e-14 81.6 76 57.9
Dinv33375 Davidia involucrata HOM05D000336 ORTHO05D002301 6.5e-14 81.3 62 69.4
Peaxi162Scf00420g00340 Petunia axillaris HOM05D000336 ORTHO05D002301 1.5e-13 80.1 62 66.1
Ciclev10014390m.g Citrus clementina HOM05D000336 ORTHO05D002301 3.2e-13 79.0 62 66.1
Actinidia18420 Actinidia chinensis HOM05D000336 ORTHO05D002301 4.2e-13 78.6 62 66.1
AT3G27260 Arabidopsis thaliana HOM05D000336 ORTHO05D002301 9.4e-13 77.4 45 80.0
Duzib147G1513 Durio zibethinus HOM05D000336 ORTHO05D002301 9.4e-13 77.4 62 67.7
TAR629G1423 Trochodendron aralioides HOM05D000336 ORTHO05D002301 9.4e-13 77.4 85 52.9
CSS0025389 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.2e-12 77.0 62 66.1
CSS0029179 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.2e-12 77.0 62 66.1
Thecc.04G029100 Theobroma cacao HOM05D000336 ORTHO05D002301 1.6e-12 76.6 62 66.1
Gohir.D07G233500 Gossypium hirsutum HOM05D000336 ORTHO05D002301 2.1e-12 76.3 62 67.7
Gorai.001G268800 Gossypium raimondii HOM05D000336 ORTHO05D002301 2.1e-12 76.3 62 67.7
Lalb_Chr14g0363131 Lupinus albus HOM05D000336 ORTHO05D002301 2.7e-12 75.9 62 66.1
AL5G16440 Arabidopsis lyrata HOM05D000336 ORTHO05D002301 3.6e-12 75.5 44 79.5
VMungo1383G1835 Vigna mungo HOM05D000336 ORTHO05D002301 4.7e-12 75.1 84 52.4
MSTRG.3102 Avicennia marina HOM05D000336 ORTHO05D002301 6.1e-12 74.7 62 59.7
MSTRG.24076 Avicennia marina HOM05D000336 ORTHO05D002301 8.0e-12 74.3 62 59.7
DCAR_007474 Daucus carota HOM05D000336 ORTHO05D002301 8.0e-12 74.3 61 65.6
Gohir.A07G226300 Gossypium hirsutum HOM05D000336 ORTHO05D002301 8.0e-12 74.3 62 66.1
Prupe.3G301300 Prunus persica HOM05D000336 ORTHO05D002301 8.0e-12 74.3 62 62.9
arahy.Tifrunner.gnm1.ann1.8Y7GXP Arachis hypogaea HOM05D000336 ORTHO05D002301 1.0e-11 73.9 62 66.1
CARHR148520 Cardamine hirsuta HOM05D000336 ORTHO05D002301 1.0e-11 73.9 44 77.3
Glyma.19G084600 Glycine max HOM05D000336 ORTHO05D002301 1.0e-11 73.9 84 52.4
Manes.15G157300 Manihot esculenta HOM05D000336 ORTHO05D002301 1.0e-11 73.9 63 66.7
Rhsim08G0045700 Rhododendron simsii HOM05D000336 ORTHO05D002301 1.0e-11 73.9 72 59.7
Aa31LG2G5280 Aethionema arabicum HOM05D000336 ORTHO05D002301 1.4e-11 73.6 45 75.6
Actinidia05932 Actinidia chinensis HOM05D000336 ORTHO05D002301 1.8e-11 73.2 71 60.6
Actinidia25599 Actinidia chinensis HOM05D000336 ORTHO05D002301 1.8e-11 73.2 60 60.0
Ca_20039_v3 Cicer arietinum L. HOM05D000336 ORTHO05D002301 1.8e-11 73.2 60 65.0
Phvul.008G150100 Phaseolus vulgaris HOM05D000336 ORTHO05D002301 1.8e-11 73.2 84 51.2
Potri.012G094300 Populus trichocarpa HOM05D000336 ORTHO05D002301 1.8e-11 73.2 78 50.0
Glyma.16G062200 Glycine max HOM05D000336 ORTHO05D002301 2.3e-11 72.8 62 62.9
Oeu057920.2 Olea europaea HOM05D000336 ORTHO05D002301 4.0e-11 72.0 70 57.1
PGSC0003DMG400020226 Solanum tuberosum HOM05D000336 ORTHO05D002301 4.0e-11 72.0 62 64.5
TWI79G1028 Tripterygium wilfordii HOM05D000336 ORTHO05D002301 4.0e-11 72.0 86 50.0
COL.COLO4_29294 Corchorus olitorius HOM05D000336 ORTHO05D002301 5.2e-11 71.6 56 66.1
PGR083G1853 Punica granatum HOM05D000336 ORTHO05D002301 5.2e-11 71.6 63 63.5
GSVIVG01008492001 Vitis vinifera HOM05D000336 ORTHO05D002301 5.2e-11 71.6 82 47.6
Actinidia01483 Actinidia chinensis HOM05D000336 ORTHO05D002301 6.8e-11 71.2 61 62.3
CAN.G473.73 Capsicum annuum HOM05D000336 ORTHO05D002301 6.8e-11 71.2 62 62.9
Sabra12G0068900 Salix brachista HOM05D000336 ORTHO05D002301 6.8e-11 71.2 62 62.9
MD17G1016600 Malus domestica HOM05D000336 ORTHO05D002301 8.8e-11 70.9 69 58.0
Gohir.D09G034400 Gossypium hirsutum HOM05D000336 ORTHO05D002301 2.0e-10 69.7 62 61.3
Solyc02g093880.3 Solanum lycopersicum HOM05D000336 ORTHO05D002301 2.0e-10 69.7 62 61.3
Gorai.006G039400 Gossypium raimondii HOM05D000336 ORTHO05D002301 2.6e-10 69.3 62 59.7
unitig_62.g23365 Utricularia gibba HOM05D000336 ORTHO05D002301 2.6e-10 69.3 62 62.9
Sopen02g038530 Solanum pennellii HOM05D000336 ORTHO05D002301 3.4e-10 68.9 62 61.3
GSVIVG01001835001 Vitis vinifera HOM05D000336 ORTHO05D002301 3.4e-10 68.9 64 60.9
Haze_14824 Corylus avellana HOM05D000336 ORTHO05D002301 4.4e-10 68.6 78 56.4
Gohir.A09G033800 Gossypium hirsutum HOM05D000336 ORTHO05D002301 4.4e-10 68.6 62 61.3
Dinv04850 Davidia involucrata HOM05D000336 ORTHO05D002301 5.7e-10 68.2 85 49.4
Carub.0005s0551 Capsella rubella HOM05D000336 ORTHO05D002301 7.5e-10 67.8 57 63.2
Cpa.g.sc130.21 Carica papaya HOM05D000336 ORTHO05D002301 9.8e-10 67.4 62 61.3
Glyma.16G062300 Glycine max HOM05D000336 ORTHO05D002301 9.8e-10 67.4 64 60.9
Lj1g0013510 Lotus japonicus HOM05D000336 ORTHO05D002301 9.8e-10 67.4 59 61.0
THA.LOC104805341 Tarenaya hassleriana HOM05D000336 ORTHO05D002301 9.8e-10 67.4 64 57.8
Aqoxy3G01450 Aquilegia oxysepala HOM05D000336 ORTHO05D002301 1.3e-09 67.0 83 47.0
Cfa007264 Carpinus fangiana HOM05D000336 ORTHO05D002301 1.3e-09 67.0 62 62.9
Ca_26940_v3 Cicer arietinum L. HOM05D000336 ORTHO05D002301 1.3e-09 67.0 62 58.1
ECA246G5337 Erigeron canadensis HOM05D000336 ORTHO05D002301 1.3e-09 67.0 66 65.2
Lsat_1_v5_gn_0_23481 Lactuca sativa HOM05D000336 ORTHO05D002301 1.3e-09 67.0 69 58.0
Psat3g177720 Pisum sativum HOM05D000336 ORTHO05D002301 1.3e-09 67.0 60 58.3
Sed0024075 Sechium edule HOM05D000336 ORTHO05D002301 1.3e-09 67.0 62 61.3
FvH4_6g52920 Fragaria vesca HOM05D000336 ORTHO05D002301 1.7e-09 66.6 77 51.9
FAN02G4360 Fragaria x ananassa HOM05D000336 ORTHO05D002301 1.7e-09 66.6 77 51.9
FAN05G1981 Fragaria x ananassa HOM05D000336 ORTHO05D002301 1.7e-09 66.6 77 51.9
FAN14G5669 Fragaria x ananassa HOM05D000336 ORTHO05D002301 1.7e-09 66.6 77 51.9
MD09G1016100 Malus domestica HOM05D000336 ORTHO05D002301 1.7e-09 66.6 70 52.9
Nitab4.5_0001863g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002301 1.7e-09 66.6 64 62.5
Potri.001G335000 Populus trichocarpa HOM05D000336 ORTHO05D002301 1.7e-09 66.6 61 62.3
Sed0001606 Sechium edule HOM05D000336 ORTHO05D002301 1.7e-09 66.6 62 58.1
TPR.G1103 Trifolium pratense HOM05D000336 ORTHO05D002301 1.7e-09 66.6 61 60.7
Gohir.A09G245900 Gossypium hirsutum HOM05D000336 ORTHO05D002301 2.2e-09 66.2 61 57.4
Gohir.D09G246601 Gossypium hirsutum HOM05D000336 ORTHO05D002301 2.2e-09 66.2 61 57.4
HanXRQChr17g0549601 Helianthus annuus HOM05D000336 ORTHO05D002301 2.8e-09 65.9 70 58.6
Thecc.03G124700 Theobroma cacao HOM05D000336 ORTHO05D002301 2.8e-09 65.9 61 55.7
CSS0041288 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 3.7e-09 65.5 79 51.9
Cfa018870 Carpinus fangiana HOM05D000336 ORTHO05D002301 3.7e-09 65.5 62 61.3
Cc07_g00520 Coffea canephora HOM05D000336 ORTHO05D002301 3.7e-09 65.5 63 58.7
MELO3C026222.2 Cucumis melo HOM05D000336 ORTHO05D002301 3.7e-09 65.5 61 55.7
CsaV3_1G000730 Cucumis sativus L. HOM05D000336 ORTHO05D002301 3.7e-09 65.5 61 55.7
FAN09G3672 Fragaria x ananassa HOM05D000336 ORTHO05D002301 3.7e-09 65.5 77 51.9
Lju41C49G11 Lonicera japonica HOM05D000336 ORTHO05D002301 3.7e-09 65.5 61 57.4
Medtr0018s0090 Medicago truncatula HOM05D000336 ORTHO05D002301 3.7e-09 65.5 61 62.3
Cc04_g10110 Coffea canephora HOM05D000336 ORTHO05D002301 4.8e-09 65.1 61 57.4
Nitab4.5_0001664g0090 Nicotiana tabacum HOM05D000336 ORTHO05D002301 4.8e-09 65.1 61 59.0
Nitab4.5_0005327g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002301 4.8e-09 65.1 61 59.0
MELO3C014860.2 Cucumis melo HOM05D000336 ORTHO05D002301 6.3e-09 64.7 62 59.7
CsaV3_3G027270 Cucumis sativus L. HOM05D000336 ORTHO05D002301 6.3e-09 64.7 62 59.7
Lj1g0024649 Lotus japonicus HOM05D000336 ORTHO05D002301 6.3e-09 64.7 62 51.6
Oeu045465.1 Olea europaea HOM05D000336 ORTHO05D002301 6.3e-09 64.7 61 55.7
Sp6g29760 Schrenkiella parvula HOM05D000336 ORTHO05D002301 6.3e-09 64.7 60 58.3
Hund02419 Selenicereus undatus HOM05D000336 ORTHO05D002301 6.3e-09 64.7 90 53.3
Atru.chr6.2499 Acer truncatum HOM05D000336 ORTHO05D002301 8.3e-09 64.3 60 60.0
CiPaw.03G051500 Carya illinoinensis HOM05D000336 ORTHO05D002301 8.3e-09 64.3 62 59.7
Duzib084G0728 Durio zibethinus HOM05D000336 ORTHO05D002301 8.3e-09 64.3 61 55.7
Gorai.006G271100 Gossypium raimondii HOM05D000336 ORTHO05D002301 8.3e-09 64.3 61 57.4
Manes.06G116700 Manihot esculenta HOM05D000336 ORTHO05D002301 8.3e-09 64.3 63 57.1
TPR.G1126 Trifolium pratense HOM05D000336 ORTHO05D002301 8.3e-09 64.3 54 63.0
TAR374G0074 Trochodendron aralioides HOM05D000336 ORTHO05D002301 8.3e-09 64.3 63 55.6
COL.COLO4_16829 Corchorus olitorius HOM05D000336 ORTHO05D002301 1.1e-08 63.9 60 56.7
Eucgr.J02307 Eucalyptus grandis HOM05D000336 ORTHO05D002301 1.1e-08 63.9 62 58.1
MBI08_g33784_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002301 1.1e-08 63.9 57 61.4
Oeu023475.2 Olea europaea HOM05D000336 ORTHO05D002301 1.1e-08 63.9 61 55.7
Carub.0006s1247 Capsella rubella HOM05D000336 ORTHO05D002301 2.4e-08 62.8 63 55.6
ClCG05G013270 Citrullus lanatus HOM05D000336 ORTHO05D002301 2.4e-08 62.8 63 57.1
Ciclev10018939m.g Citrus clementina HOM05D000336 ORTHO05D002301 2.4e-08 62.8 60 60.0
DCAR_021761 Daucus carota HOM05D000336 ORTHO05D002301 2.4e-08 62.8 84 48.8
TAR371G0061 Trochodendron aralioides HOM05D000336 ORTHO05D002301 2.4e-08 62.8 83 49.4
Aa31LG11G15060 Aethionema arabicum HOM05D000336 ORTHO05D002301 3.1e-08 62.4 61 54.1
AL6G24950 Arabidopsis lyrata HOM05D000336 ORTHO05D002301 3.1e-08 62.4 61 55.7
ClCG06G017730 Citrullus lanatus HOM05D000336 ORTHO05D002301 3.1e-08 62.4 61 54.1
Dinv25684 Davidia involucrata HOM05D000336 ORTHO05D002301 3.1e-08 62.4 62 58.1
Lj5A99G67 Lonicera japonica HOM05D000336 ORTHO05D002301 4.1e-08 62.0 88 52.3
PSO063G0493 Papaver somniferum HOM05D000336 ORTHO05D002301 4.1e-08 62.0 86 47.7
PSO782G3072 Papaver somniferum HOM05D000336 ORTHO05D002301 4.1e-08 62.0 86 47.7
Rhsim08G0186400 Rhododendron simsii HOM05D000336 ORTHO05D002301 4.1e-08 62.0 82 48.8
Duzib187G0577 Durio zibethinus HOM05D000336 ORTHO05D002301 5.4e-08 61.6 66 54.5
Lj1g0003313 Lotus japonicus HOM05D000336 ORTHO05D002301 5.4e-08 61.6 43 69.8
MBI11_g00918_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002301 5.4e-08 61.6 92 46.7
Ah.02g115300 Amaranthus hybridus HOM05D000336 ORTHO05D002301 7.0e-08 61.2 109 43.1
Sabra16G0216100 Salix brachista HOM05D000336 ORTHO05D002301 7.0e-08 61.2 62 56.5
ATR0686G245 Amborella trichopoda HOM05D000336 ORTHO05D002301 9.1e-08 60.8 62 53.2
CSS0031806 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 9.1e-08 60.8 60 56.7
Duzib205G2030 Durio zibethinus HOM05D000336 ORTHO05D002301 9.1e-08 60.8 59 55.9
TWI14G0721 Tripterygium wilfordii HOM05D000336 ORTHO05D002301 9.1e-08 60.8 60 51.7
Sabra15G0113600 Salix brachista HOM05D000336 ORTHO05D002301 1.2e-07 60.5 63 55.6
CANSAT78G2004 Cannabis sativa HOM05D000336 ORTHO05D002301 1.6e-07 60.1 62 56.5
Nn3g16544 Nelumbo nucifera HOM05D000336 ORTHO05D002301 1.6e-07 60.1 63 49.2
SalBow1G2186 Salvia bowleyana HOM05D000336 ORTHO05D002301 1.6e-07 60.1 61 54.1
TAR622G0764 Trochodendron aralioides HOM05D000336 ORTHO05D002301 1.6e-07 60.1 44 70.5
Lj9A476T60 Lonicera japonica HOM05D000336 ORTHO05D002301 2.0e-07 59.7 82 50.0
AT5G14270 Arabidopsis thaliana HOM05D000336 ORTHO05D002301 3.5e-07 58.9 63 57.1
Haze_07254 Corylus avellana HOM05D000336 ORTHO05D002301 3.5e-07 58.9 62 54.8
SEGI_19191 Sequoiadendron giganteum HOM05D000336 ORTHO05D002301 3.5e-07 58.9 62 56.5
CANSAT78G0616 Cannabis sativa HOM05D000336 ORTHO05D002301 4.5e-07 58.5 62 54.8
HanXRQChr09g0255961 Helianthus annuus HOM05D000336 ORTHO05D002301 5.9e-07 58.2 65 58.5
Manes.14G054300 Manihot esculenta HOM05D000336 ORTHO05D002301 7.7e-07 57.8 60 56.7
Os02g0601800 Oryza sativa ssp. japonica HOM05D000336 ORTHO05D002301 7.7e-07 57.8 132 37.1
Sed0015066 Sechium edule HOM05D000336 ORTHO05D002301 7.7e-07 57.8 63 50.8
CAN.G352.45 Capsicum annuum HOM05D000336 ORTHO05D002301 1.0e-06 57.4 61 49.2
PSO017G5005 Papaver somniferum HOM05D000336 ORTHO05D002301 1.0e-06 57.4 75 49.3
PSO478G3900 Papaver somniferum HOM05D000336 ORTHO05D002301 1.0e-06 57.4 75 49.3
Lalb_Chr23g0273531 Lupinus albus HOM05D000336 ORTHO05D002301 1.3e-06 57.0 59 59.3
Psat5g140200 Pisum sativum HOM05D000336 ORTHO05D002301 1.3e-06 57.0 84 41.7
Sc07g0004240 Simmondsia chinensis HOM05D000336 ORTHO05D002301 1.3e-06 57.0 57 57.9
Medtr3g075040 Medicago truncatula HOM05D000336 ORTHO05D002301 1.7e-06 56.6 84 41.7
Ca_15261_v3 Cicer arietinum L. HOM05D000336 ORTHO05D002301 2.3e-06 56.2 83 41.0
Peaxi162Scf00536g00414 Petunia axillaris HOM05D000336 ORTHO05D002301 2.3e-06 56.2 70 45.7
SGA_v2.0_scaffold5G02879 Striga asiatica HOM05D000336 ORTHO05D002301 2.3e-06 56.2 61 52.5
QL02p072682 Quercus lobata HOM05D000336 ORTHO05D002301 2.9e-06 55.8 61 52.5
CANSAT64G0748 Cannabis sativa HOM05D000336 ORTHO05D002301 3.8e-06 55.5 62 56.5
Dinv11100 Davidia involucrata HOM05D000336 ORTHO05D002301 5.0e-06 55.1 83 41.0
Hma1.2p1_0014F.1_g009800 Hydrangea macrophylla HOM05D000336 ORTHO05D002301 6.6e-06 54.7 61 52.5
Lj4g0005343 Lotus japonicus HOM05D000336 ORTHO05D002301 6.6e-06 54.7 60 51.7
TWI39G0528 Tripterygium wilfordii HOM05D000336 ORTHO05D002301 6.6e-06 54.7 61 47.5
vmacro19227 Vaccinium macrocarpon HOM05D000336 ORTHO05D002301 6.6e-06 54.7 66 50.0
CiPaw.11G010900 Carya illinoinensis HOM05D000336 ORTHO05D002301 8.6e-06 54.3 60 50.0
Nitab4.5_0006073g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002301 8.6e-06 54.3 67 47.8


User provided reference genes

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