Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p35180 Brassica napus HOM05D003760 ORTHO05D004672 1.7e-17 91.7 47 100.0
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
BolC1t05559H Brassica oleracea HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
BraA01t04387Z Brassica rapa HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 1.5e-10 68.6 40 92.5
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 4.4e-10 67.0 40 90.0
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 4.4e-10 67.0 40 90.0
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 4.4e-10 67.0 40 90.0
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 4.4e-10 67.0 40 90.0
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 4.4e-10 67.0 40 90.0
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 5.7e-10 66.6 40 90.0
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 8.3e-09 62.8 40 82.5
QL06p019987 Quercus lobata HOM05D003760 ORTHO05D004672 1.1e-08 62.4 40 80.0
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 1.1e-08 62.4 40 77.5
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.4e-08 62.0 40 80.0
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 1.4e-08 62.0 40 80.0
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 1.4e-08 62.0 40 80.0
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 1.4e-08 62.0 40 80.0
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 75.0
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 77.5
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 80.0
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 1.8e-08 61.6 40 77.5
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 2.4e-08 61.2 40 75.0
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 3.1e-08 60.8 40 77.5
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 3.1e-08 60.8 40 77.5
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 3.1e-08 60.8 40 77.5
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 3.1e-08 60.8 40 77.5
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 3.1e-08 60.8 40 77.5
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FvH4_4g04150 Fragaria vesca HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FAN12G0242 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
FAN17G2831 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Psat6g019840 Pisum sativum HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Psat6g019960 Pisum sativum HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 80.0
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 80.0
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
RcHm_v2.0_Chr4g0394571 Rosa chinensis HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
TPR.G36778 Trifolium pratense HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 4.1e-08 60.5 40 77.5
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
AUR62035743 Chenopodium quinoa HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
Os10g0392700 Oryza sativa ssp. japonica HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 77.5
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 5.4e-08 60.1 40 75.0
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 7.0e-08 59.7 40 72.5
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 7.0e-08 59.7 40 75.0
TAR701G0001 Trochodendron aralioides HOM05D003760 ORTHO05D004672 7.0e-08 59.7 40 75.0
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
Lj9A655T38 Lonicera japonica HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
MD13G1218200 Malus domestica HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 9.1e-08 59.3 40 75.0
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 75.0
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 75.0
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 75.0
Peaxi162Scf01732g00023 Petunia axillaris HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 72.5
Pp3c10_19890 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 72.5
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 77.5
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 72.5
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 1.2e-07 58.9 40 70.0
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 1.6e-07 58.5 40 70.0
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 1.6e-07 58.5 40 72.5
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 1.6e-07 58.5 40 75.0
Pp3c21_14090 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.6e-07 58.5 40 75.0
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 2.0e-07 58.2 36 77.8
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 2.0e-07 58.2 40 75.0
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 2.0e-07 58.2 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 2.7e-07 57.8 40 70.0
COL.COLO4_15929 Corchorus olitorius HOM05D003760 ORTHO05D004672 2.7e-07 57.8 40 75.0
Duzib128G1330 Durio zibethinus HOM05D003760 ORTHO05D004672 2.7e-07 57.8 40 75.0
FAN22G1391 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.7e-07 57.8 40 75.0
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 3.5e-07 57.4 40 72.5
CSS0016471 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 4.5e-07 57.0 41 70.7
SMO340G0195 Selaginella moellendorffii HOM05D003760 ORTHO05D004672 4.5e-07 57.0 40 67.5
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 4.5e-07 57.0 40 70.0
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 4.5e-07 57.0 40 70.0
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 4.5e-07 57.0 40 72.5
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 5.9e-07 56.6 40 70.0
Prupe.1G044800 Prunus persica HOM05D003760 ORTHO05D004672 5.9e-07 56.6 40 70.0
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 5.9e-07 56.6 40 72.5
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 5.9e-07 56.6 40 72.5
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 7.7e-07 56.2 40 72.5
QL04p014432 Quercus lobata HOM05D003760 ORTHO05D004672 1.0e-06 55.8 40 72.5
vmacro15463 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 1.0e-06 55.8 40 70.0
RcHm_v2.0_Chr1g0378031 Rosa chinensis HOM05D003760 ORTHO05D004672 1.3e-06 55.5 40 72.5
Ciclev10006759m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.7e-06 55.1 40 70.0
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 1.7e-06 55.1 40 70.0
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 2.2e-06 54.7 40 65.0
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 2.9e-06 54.3 41 68.3
C03p42780 Brassica napus HOM05D003760 ORTHO05D004672 3.8e-06 53.9 29 96.6


User provided reference genes

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