Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 7.0e-150 533.9 260 100.0
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 7.0e-150 533.9 260 100.0
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 7.5e-144 513.8 260 95.8
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.3e-143 513.1 261 96.2
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 2.4e-142 508.8 261 95.4
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 6.8e-137 490.7 248 97.6
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 9.8e-136 486.9 260 91.9
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 4.9e-135 484.6 260 89.6
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 1.1e-134 483.4 260 90.4
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 1.4e-134 483.0 260 90.4
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 7.0e-134 480.7 260 91.5
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 1.6e-133 479.6 260 89.6
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 8.6e-132 473.8 261 89.3
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 2.7e-125 452.2 266 83.1
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 4.4e-120 434.9 258 82.2
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.9e-99 366.3 270 69.6
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 2.4e-97 359.4 274 66.8
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 4.0e-97 358.6 274 67.2
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 1.5e-96 356.7 264 68.9
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 1.5e-96 356.7 249 68.7
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.4e-96 355.5 239 73.6
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 4.5e-96 355.1 272 67.3
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 9.9e-96 354.0 255 69.8
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 9.9e-96 354.0 271 65.7
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 9.9e-96 354.0 216 78.7
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 1.7e-95 353.2 249 68.3
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 2.2e-95 352.8 253 69.6
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 2.9e-95 352.4 228 74.6
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 2.9e-95 352.4 267 69.3
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 3.8e-95 352.1 213 78.4
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 4.9e-95 351.7 222 77.9
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 4.9e-95 351.7 242 71.5
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 6.4e-95 351.3 213 76.5
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 6.4e-95 351.3 212 79.2
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.1e-94 350.5 267 67.0
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.9e-94 349.7 219 78.1
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 1.9e-94 349.7 246 71.5
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 2.4e-94 349.4 212 78.8
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 3.2e-94 349.0 254 67.7
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 4.2e-94 348.6 211 77.3
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 1.2e-93 347.1 219 76.7
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 3.5e-93 345.5 268 65.3
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 4.6e-93 345.1 269 66.9
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 6.0e-93 344.7 274 65.3
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 7.9e-93 344.4 255 66.7
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 1.0e-92 344.0 247 69.2
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 1.3e-92 343.6 211 77.7
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.3e-92 342.8 240 72.1
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 3.0e-92 342.4 269 66.5
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 3.0e-92 342.4 236 72.0
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 3.9e-92 342.0 262 67.9
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.9e-92 342.0 213 77.0
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 6.7e-92 341.3 224 73.7
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.1e-91 340.5 224 73.7
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 3.3e-91 339.0 253 66.0
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 3.3e-91 339.0 269 65.4
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 4.3e-91 338.6 243 70.0
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.6e-90 336.7 219 72.6
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 2.8e-90 335.9 271 64.6
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 8.1e-90 334.3 255 65.5
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 1.1e-89 334.0 229 71.2
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 1.1e-89 334.0 265 63.4
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 3.1e-89 332.4 257 65.4
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 9.0e-89 330.9 304 59.9
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 5.8e-88 328.2 234 68.4
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.7e-87 326.6 275 61.5
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 3.8e-87 325.5 255 62.7
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 4.9e-87 325.1 255 62.4
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.1e-86 323.9 232 67.7
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.9e-86 323.2 282 60.6
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 3.2e-86 322.4 222 70.7
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.2e-85 320.5 210 72.4
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 3.0e-84 315.8 212 71.2
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 7.4e-83 311.2 217 70.5
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.2e-80 303.9 249 63.9
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 1.5e-80 303.5 212 70.8
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 7.6e-80 301.2 204 72.5
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.3e-79 300.4 177 78.0
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.2e-79 299.7 231 67.5
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 8.4e-79 297.7 268 59.3
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 2.5e-78 296.2 220 66.4
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 7.1e-78 294.7 211 69.2
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.0e-76 290.8 173 78.6
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.5e-75 287.0 205 68.3
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 7.4e-75 284.6 225 61.8
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.3e-74 283.9 218 68.3
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 2.8e-74 282.7 216 65.7
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.1e-73 280.8 167 77.2
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.4e-73 280.4 315 51.7
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.5e-72 276.9 187 72.7
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 6.5e-71 271.6 183 72.7
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.0e-68 264.2 312 50.0
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-68 263.8 200 67.5
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 3.0e-68 262.7 196 65.8
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 3.9e-68 262.3 225 58.7
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 7.4e-67 258.1 203 67.5
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 6.3e-66 255.0 190 65.8
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 9.1e-65 251.1 159 76.7
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.0e-64 250.0 177 71.2
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 9.4e-62 241.1 196 58.2
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 8.2e-58 228.0 169 68.6
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 3.1e-57 226.1 179 59.8
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 5.9e-56 221.9 202 54.5
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.1e-53 213.4 181 56.9
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 3.0e-52 209.5 249 51.4
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.0e-51 206.8 120 82.5
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.7e-50 203.8 163 60.7
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 4.8e-50 202.2 131 74.0
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 1.0e-44 184.5 117 74.4
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 5.9e-40 168.7 183 48.1
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 1.6e-37 160.6 212 43.9
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.7e-34 150.6 168 50.6
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 4.1e-33 146.0 81 84.0
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 4.2e-30 136.0 76 82.9
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 3.6e-29 132.9 184 39.1
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 8.9e-28 128.3 117 54.7
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.7e-26 124.0 116 44.0
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 6.3e-26 122.1 69 78.3
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 5.6e-22 109.0 58 84.5
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 9.5e-22 108.2 167 44.9
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 8.3e-18 95.1 73 64.4
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 3.5e-16 89.7 63 66.7
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 5.6e-14 82.4 45 80.0
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 5.6e-14 82.4 51 72.5
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 7.3e-14 82.0 58 67.2
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 4.7e-13 79.3 67 55.2
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 6.8e-12 75.5 44 75.0
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 8.9e-12 75.1 61 68.9


User provided reference genes

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