Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.2e-221 771.9 382 100.0
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.2e-177 626.7 352 90.3
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.6e-174 616.3 322 95.0
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.1e-171 605.9 322 93.5
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-170 603.6 307 97.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 9.9e-169 597.0 307 95.8
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.5e-166 588.6 309 94.2
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.7e-165 586.3 307 94.5
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 5.1e-165 584.7 308 93.8
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.1e-163 579.3 307 92.8
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 3.1e-162 575.5 307 91.9
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 5.8e-161 571.2 307 91.5
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 9.9e-161 570.5 312 91.0
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.7e-160 569.7 308 91.2
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 8.4e-160 567.4 307 89.6
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 8.7e-157 557.4 314 89.5
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 9.3e-151 537.3 309 82.2
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.1e-132 477.2 299 74.2
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 5.7e-132 474.9 299 72.9
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.3e-131 473.8 301 71.8
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.6e-131 473.4 299 72.9
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 6.3e-131 471.5 299 74.2
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 6.3e-131 471.5 295 72.5
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 8.2e-131 471.1 299 73.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 5.3e-130 468.4 306 71.9
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 9.0e-130 467.6 301 71.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 9.0e-130 467.6 302 70.9
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.5e-129 466.8 298 74.2
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.6e-129 466.1 304 69.7
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 7.7e-129 464.5 304 69.7
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.0e-128 464.2 307 71.7
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.8e-128 462.2 307 70.7
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 5.0e-128 461.8 306 70.6
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.1e-127 460.7 302 70.2
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.4e-127 460.3 301 69.8
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.9e-127 459.9 301 69.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.9e-127 459.9 299 71.9
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.9e-127 459.9 307 70.7
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.2e-127 459.1 299 71.9
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 3.2e-127 459.1 306 69.6
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 4.2e-127 458.8 307 69.4
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 4.2e-127 458.8 307 69.7
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 5.5e-127 458.4 307 69.4
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 7.2e-127 458.0 301 69.8
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.2e-126 457.2 309 68.6
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.1e-126 456.4 308 68.2
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.7e-126 456.1 307 69.4
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.4e-125 453.8 306 69.6
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.8e-125 453.4 306 69.6
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.3e-125 453.0 299 70.9
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.3e-125 453.0 307 69.7
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.0e-125 452.6 301 69.4
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.0e-125 452.6 310 68.1
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 5.1e-125 451.8 308 67.2
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 6.7e-125 451.4 310 66.8
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 6.7e-125 451.4 308 67.2
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-124 450.7 307 70.4
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.5e-124 450.3 306 68.3
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.5e-124 450.3 306 68.6
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 5.7e-124 448.4 303 69.3
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 7.4e-124 448.0 307 67.1
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 7.4e-124 448.0 309 69.6
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 9.7e-124 447.6 306 68.6
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.3e-123 447.2 307 68.1
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 3.7e-123 445.7 307 68.1
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 4.8e-123 445.3 305 66.6
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 4.8e-123 445.3 305 69.2
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 4.8e-123 445.3 308 66.2
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 6.3e-123 444.9 305 67.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.1e-122 442.2 298 69.8
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 6.9e-122 441.4 302 68.5
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.2e-121 440.7 306 66.3
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.5e-121 440.3 307 67.4
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.5e-121 440.3 306 68.0
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.0e-121 439.9 300 69.0
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.0e-121 439.9 307 67.4
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.0e-121 439.9 306 66.3
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.0e-121 439.9 307 67.4
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 3.4e-121 439.1 302 69.2
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.9e-121 438.3 310 66.1
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 5.9e-121 438.3 307 65.8
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 5.9e-121 438.3 307 67.1
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.3e-120 437.2 307 68.1
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.7e-120 436.8 307 66.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 5.0e-120 435.3 307 65.5
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 6.5e-120 434.9 310 65.8
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.1e-119 434.1 309 65.0
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 5.5e-119 431.8 310 65.8
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.2e-118 430.6 296 65.9
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.6e-118 429.1 331 63.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.0e-117 427.6 307 63.2
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.3e-117 426.4 381 54.6
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 4.4e-116 422.2 307 63.2
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.3e-115 420.6 314 65.9
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.7e-115 420.2 314 65.9
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.1e-114 417.5 303 66.3
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.4e-114 416.4 379 55.1
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 7.0e-114 414.8 351 59.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 5.0e-112 408.7 307 63.2
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 5.5e-111 405.2 324 63.0
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 7.2e-111 404.8 307 65.5
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 6.1e-110 401.7 295 63.4
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.8e-106 390.2 210 91.9
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 3.1e-106 389.4 295 62.0
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 4.1e-106 389.0 269 66.9
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.2e-104 383.3 268 66.0
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.0e-101 374.4 262 67.2
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 2.0e-100 370.2 262 66.0
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.6e-92 343.2 304 56.2
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.8e-91 339.7 236 65.3
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 3.7e-91 339.3 304 52.0
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.5e-87 327.4 289 55.4
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-83 314.3 304 53.0
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.2e-83 313.5 263 60.5
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 9.2e-82 308.1 214 65.4
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.2e-81 307.8 301 50.2
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 4.6e-81 305.8 199 71.4
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 5.6e-71 272.3 175 68.6
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 4.0e-69 266.2 175 66.9
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 3.5e-65 253.1 170 75.9
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.1e-62 243.8 244 47.1
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.4e-61 241.1 130 93.8
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.4e-58 231.1 176 63.1
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.2e-57 228.0 179 64.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-53 213.8 142 69.7
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 6.0e-49 199.1 188 51.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.3e-46 191.4 127 70.9
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 7.1e-42 175.6 130 61.5
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.3e-40 170.6 105 75.2
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-39 168.3 130 62.3
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.3e-35 154.8 109 67.9
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.1e-33 147.5 156 48.1
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.1e-31 141.7 109 63.3
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.4e-31 139.0 109 64.2
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 1.3e-30 138.3 112 60.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 1.0e-19 102.1 74 62.2
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.8e-14 83.2 52 67.3
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 3.3e-07 60.5 27 92.6
EL10Ac5g11505 Beta vulgaris HOM05D005736 ORTHO05D026989 8.2e-06 55.8 32 75.0


User provided reference genes

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