Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 7.9e-68 260.4 138 100.0
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 2.0e-66 255.8 138 98.6
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 5.5e-61 237.7 138 93.5
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 5.5e-61 237.7 138 93.5
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 5.5e-61 237.7 138 93.5
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 3.6e-36 155.2 144 66.0
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 1.5e-34 149.8 145 60.7
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 6.3e-33 144.4 144 62.5
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 3.3e-29 132.1 133 57.9
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.2e-28 130.2 133 57.1
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 1.8e-27 126.3 144 50.0
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 3.4e-26 122.1 125 52.8
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.0e-19 100.5 131 42.7
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 2.3e-19 99.4 134 45.5
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 9.8e-18 94.0 138 41.3
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 2.2e-17 92.8 134 41.0
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 2.9e-17 92.4 136 43.4
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 3.7e-17 92.0 140 45.0
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 3.7e-17 92.0 136 42.6
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.9e-17 91.7 138 39.9
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.4e-16 90.1 145 42.1
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 3.2e-16 89.0 138 38.4
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 9.2e-16 87.4 137 43.8
C09p00430 Brassica napus HOM05D036798 ORTHO05D027546 1.6e-15 86.7 124 54.0
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 2.7e-15 85.9 136 41.9
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 3.5e-15 85.5 131 42.0
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 3.5e-15 85.5 133 41.4
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 4.6e-15 85.1 129 38.8
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 7.8e-15 84.3 139 39.6
BcaB01g02256 Brassica carinata HOM05D006065 ORTHO05D027546 1.3e-14 83.6 142 47.2
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.3e-14 83.6 124 36.3
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.7e-14 83.2 134 39.6
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 1.7e-14 83.2 138 39.1
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 3.0e-14 82.4 133 41.4
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 3.9e-14 82.0 143 37.8
BolC9t52979H Brassica oleracea HOM05D036798 ORTHO05D027546 3.9e-14 82.0 123 51.2
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 3.9e-14 82.0 135 35.6
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 5.0e-14 81.6 150 38.7
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 5.0e-14 81.6 132 36.4
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 5.0e-14 81.6 133 36.8
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 6.6e-14 81.3 144 38.2
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 6.6e-14 81.3 127 39.4
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 8.6e-14 80.9 127 40.9
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.1e-13 80.5 135 40.7
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.1e-13 80.5 133 36.8
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 1.1e-13 80.5 150 38.7
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.5e-13 80.1 149 37.6
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 3.3e-13 79.0 128 34.4
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 3.3e-13 79.0 134 36.6
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 4.3e-13 78.6 134 35.1
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 7.3e-13 77.8 118 40.7
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 9.5e-13 77.4 145 38.6
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 9.5e-13 77.4 148 39.9
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 2.8e-12 75.9 133 35.3
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.6e-12 75.5 143 37.1
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 3.6e-12 75.5 131 36.6
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 3.6e-12 75.5 127 39.4
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.2e-12 74.7 127 40.9
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 8.1e-12 74.3 118 39.8
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 1.1e-11 73.9 135 36.3
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 1.4e-11 73.6 131 39.7
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.8e-11 73.2 138 38.4
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.8e-11 73.2 143 36.4
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 2.3e-11 72.8 186 33.9
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.1e-11 72.4 129 41.1
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 4.0e-11 72.0 138 37.7
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 4.0e-11 72.0 144 34.0
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 5.2e-11 71.6 145 37.9
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 6.8e-11 71.2 127 40.2
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.8e-11 71.2 127 40.2
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.2e-10 70.5 145 37.9
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 1.5e-10 70.1 132 34.1
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.5e-10 70.1 142 38.0
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.5e-10 70.1 141 36.2
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.6e-10 69.3 122 36.1
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 2.6e-10 69.3 138 37.0
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 3.4e-10 68.9 164 30.5
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.4e-10 68.6 135 37.8
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.4e-10 68.6 135 37.8
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 7.5e-10 67.8 143 35.7
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.5e-10 67.8 127 38.6
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 7.5e-10 67.8 143 34.3
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 9.8e-10 67.4 127 38.6
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 9.8e-10 67.4 134 33.6
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 1.7e-09 66.6 122 37.7
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 2.9e-09 65.9 150 35.3
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 3.7e-09 65.5 136 33.8
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 8.3e-09 64.3 123 37.4
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 8.3e-09 64.3 145 35.2
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 1.9e-08 63.2 143 35.0
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 3.2e-08 62.4 112 37.5
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 3.2e-08 62.4 135 34.1
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 5.4e-08 61.6 142 33.8
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 7.1e-08 61.2 123 31.7
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 7.1e-08 61.2 134 35.8
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 9.2e-08 60.8 137 33.6
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.2e-07 60.5 146 30.1
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 1.2e-07 60.5 120 32.5
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 2.1e-07 59.7 146 30.1
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 3.5e-07 58.9 142 33.1
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.0e-06 57.4 134 32.1
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 2.3e-06 56.2 143 33.6
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.9e-06 55.5 112 34.8
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 5.1e-06 55.1 114 33.3
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 5.1e-06 55.1 127 30.7
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 6.6e-06 54.7 112 33.9


User provided reference genes

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