Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 3.1e-46 188.0 85 100.0
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 3.1e-46 188.0 85 100.0
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-44 181.0 84 97.6
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-42 176.0 84 96.4
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.6e-42 175.6 85 95.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.7e-42 174.9 84 95.2
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 4.6e-42 174.1 87 93.1
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 4.6e-42 174.1 87 93.1
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 6.0e-42 173.7 85 95.3
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.0e-41 172.9 89 91.0
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.0e-41 172.9 84 95.2
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.0e-41 172.9 84 95.2
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.0e-41 172.9 84 95.2
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.3e-41 172.6 84 94.0
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-41 172.2 81 97.5
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.9e-41 171.0 88 90.9
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.9e-41 171.0 88 90.9
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.1e-40 169.5 84 92.9
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 9.6e-40 166.4 87 89.7
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.3e-39 166.0 83 90.4
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.8e-39 164.9 85 88.2
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 4.8e-39 164.1 89 86.5
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 9.0e-38 159.8 89 84.3
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-37 158.3 78 93.6
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.7e-36 155.6 79 87.3
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 86 84.9
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 86 84.9
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-36 155.2 86 84.9
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.9e-36 154.8 80 87.5
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.1e-35 152.9 86 83.7
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-35 152.9 84 84.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.9e-35 152.1 82 84.1
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 3.2e-35 151.4 83 81.9
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.2e-35 151.4 81 84.0
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.2e-35 151.4 81 84.0
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.2e-35 151.4 81 84.0
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 3.2e-35 151.4 83 81.9
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 4.2e-35 151.0 83 81.9
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.2e-35 151.0 86 82.6
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 7.1e-35 150.2 78 87.2
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 7.1e-35 150.2 78 84.6
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 9.3e-35 149.8 78 87.2
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.2e-34 149.4 90 76.7
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.2e-34 149.4 90 76.7
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.2e-34 149.4 83 83.1
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 82.1
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 79.8
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.1e-34 148.7 87 78.2
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 3.5e-34 147.9 82 80.5
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 4.6e-34 147.5 82 81.7
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 83 80.7
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 6.0e-34 147.1 84 82.1
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 6.0e-34 147.1 82 80.5
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 6.0e-34 147.1 77 84.4
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 6.0e-34 147.1 80 83.8
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 7.9e-34 146.7 80 80.0
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 7.9e-34 146.7 82 81.7
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 7.9e-34 146.7 76 81.6
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.0e-33 146.4 83 81.9
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.0e-33 146.4 87 77.0
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.3e-33 146.0 86 75.6
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.3e-33 146.0 86 75.6
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.3e-33 146.0 77 80.5
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.3e-33 146.0 82 79.3
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.3e-33 146.0 80 78.8
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.3e-33 146.0 80 78.8
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.8e-33 145.6 82 79.3
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.8e-33 145.6 79 81.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.8e-33 145.6 88 76.1
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.8e-33 145.6 81 79.0
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.8e-33 145.6 81 77.8
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.8e-33 145.6 81 80.2
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.3e-33 145.2 84 78.6
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.3e-33 145.2 76 82.9
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.3e-33 145.2 88 79.5
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.9e-33 144.4 87 74.7
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 6.7e-33 143.7 76 81.6
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 8.7e-33 143.3 81 77.8
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 8.7e-33 143.3 75 81.3
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 8.7e-33 143.3 73 84.9
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.1e-32 142.9 88 77.3
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.5e-32 142.5 84 79.8
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 1.5e-32 142.5 80 77.5
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 1.5e-32 142.5 80 77.5
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 1.5e-32 142.5 80 77.5
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.9e-32 142.1 78 82.1
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.9e-32 142.1 88 76.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.5e-32 141.7 87 75.9
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 3.3e-32 141.4 81 76.5
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 3.3e-32 141.4 84 77.4
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 3.3e-32 141.4 80 78.8
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 4.3e-32 141.0 87 73.6
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.3e-32 141.0 76 78.9
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 4.3e-32 141.0 84 77.4
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 4.3e-32 141.0 87 75.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.6e-32 140.6 82 76.8
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.6e-31 139.0 80 77.5
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.1e-31 138.7 79 79.7
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.1e-31 138.7 86 75.6
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 3.7e-31 137.9 82 75.6
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 4.8e-31 137.5 88 75.0
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 8.1e-31 136.7 88 73.9
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 8.1e-31 136.7 83 72.3
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.8e-30 135.6 82 76.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.5e-29 132.5 70 80.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.5e-29 132.5 80 75.0
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 3.4e-29 131.3 75 70.7
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 4.9e-28 127.5 90 63.3
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.6e-26 122.5 61 83.6
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.1e-26 122.1 61 83.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.3e-23 112.8 54 96.3
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 3.7e-23 111.3 68 67.6
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 3.7e-23 111.3 153 41.8
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.1e-22 109.8 53 98.1
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-22 109.0 54 96.3
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.0e-22 107.8 55 94.5
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.2e-21 106.3 80 62.5
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.0e-21 105.5 54 81.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.6e-21 105.1 63 81.0
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.6e-21 105.1 69 62.3
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 5.8e-21 104.0 62 80.6
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 7.6e-21 103.6 55 87.3
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 7.6e-21 103.6 55 87.3
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.3e-20 102.8 54 90.7
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.7e-20 102.4 53 86.8
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.5e-20 100.5 60 78.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.4e-19 99.4 53 83.0
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 3.2e-19 98.2 63 77.8
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 5.5e-19 97.4 55 80.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 7.1e-19 97.1 63 77.8
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.2e-18 96.3 56 78.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.7e-18 95.1 55 76.4
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 7.9e-18 93.6 55 78.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.0e-17 93.2 60 68.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.3e-17 92.0 63 71.4
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 3.9e-17 91.3 62 69.4
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.9e-16 89.0 47 74.5
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.7e-16 87.4 46 76.1
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.7e-16 87.4 47 76.6
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.8e-15 84.3 46 73.9
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.1e-14 81.3 39 89.7
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 5.9e-13 77.4 69 50.7
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 7.7e-13 77.0 76 51.3
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-12 76.6 64 57.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 7.2e-11 70.5 70 48.6


User provided reference genes

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