Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1774.2 918 100.0
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 0.0e+00 1771.1 918 99.8
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1598.9 942 88.6
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1590.1 942 88.7
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 0.0e+00 1589.3 942 88.3
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 0.0e+00 1363.2 977 75.8
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1347.8 956 77.8
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 0.0e+00 1338.9 986 74.3
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 0.0e+00 1329.3 987 73.5
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 0.0e+00 1298.5 984 73.4
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 0.0e+00 1297.0 995 72.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1267.7 980 74.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 0.0e+00 1267.7 980 74.0
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1264.6 980 73.9
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 0.0e+00 1236.1 986 71.9
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1232.6 969 73.1
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 0.0e+00 1232.6 982 70.9
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 0.0e+00 1196.4 991 70.6
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 0.0e+00 1134.8 958 70.5
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 7.9e-289 997.3 1074 57.7
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.0e-272 943.7 995 57.4
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.7e-243 846.7 1042 52.0
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 9.8e-239 830.9 1017 51.6
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.4e-213 746.5 991 50.7
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 8.8e-155 552.0 1128 40.4
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 1.1e-152 545.0 1105 41.1
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.1e-144 518.5 1115 38.1
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.1e-141 508.4 1099 40.3
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 1.9e-141 507.7 1110 39.0
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.0e-139 501.9 1113 39.0
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 8.8e-139 498.8 1113 38.9
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 2.0e-138 497.7 1126 37.6
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 4.4e-138 496.5 1116 38.5
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 2.8e-137 493.8 1121 38.8
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 3.5e-135 486.9 1107 39.4
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 1.5e-133 481.5 1120 37.8
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 2.5e-133 480.7 1125 38.0
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.2e-133 479.2 1123 37.9
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 1.2e-132 478.4 1078 37.8
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.1e-132 477.6 1128 38.0
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.7e-132 477.2 1104 38.9
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 6.1e-132 476.1 1112 39.5
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.8e-131 474.6 1130 38.1
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 2.6e-130 470.7 1108 38.5
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 7.5e-130 469.2 1110 37.6
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 9.8e-130 468.8 1110 38.4
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.8e-129 467.2 1128 37.9
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.4e-128 464.9 1129 37.6
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.4e-128 464.2 1127 37.4
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 9.1e-128 462.2 1093 37.0
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 3.8e-126 456.8 1076 37.9
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 4.0e-123 446.8 1047 38.4
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 9.8e-122 442.2 1063 37.7
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 1.8e-120 438.0 1101 37.2
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 4.1e-120 436.8 1081 36.0
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 2.7e-119 434.1 1094 36.7
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 8.6e-118 429.1 1076 35.3
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 8.6e-118 429.1 1110 36.6
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 1.9e-117 427.9 1119 35.6
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 1.4e-115 421.8 1038 37.6
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 5.2e-115 419.9 1092 36.9
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 8.9e-115 419.1 984 38.1
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.2e-114 418.7 1092 36.3
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.0e-114 417.9 1109 36.4
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 2.6e-114 417.5 1102 36.0
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.4e-114 416.8 1010 37.2
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 2.4e-112 411.0 1074 35.7
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.2e-112 410.6 1009 36.6
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.2e-111 408.7 1066 35.3
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 2.7e-111 407.5 1062 35.4
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 1.7e-110 404.8 1102 37.2
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 3.0e-110 404.1 975 38.1
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 3.3e-109 400.6 1051 36.9
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 1.6e-108 398.3 878 38.8
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 3.6e-108 397.1 1061 35.4
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 4.7e-108 396.7 1060 34.2
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 3.1e-107 394.0 1106 35.7
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 1.2e-106 392.1 1051 33.5
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 1.5e-106 391.7 1094 33.7
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 2.6e-106 391.0 1084 35.0
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 4.4e-106 390.2 1092 34.9
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 4.9e-105 386.7 1040 34.9
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 1.4e-104 385.2 1082 36.0
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 2.0e-103 381.3 1064 33.8
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 3.5e-103 380.6 1021 35.3
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 6.0e-103 379.8 1095 34.2
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 1.3e-102 378.6 1068 34.4
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 8.6e-102 375.9 1046 35.0
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 5.6e-101 373.2 866 37.3
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 7.3e-101 372.9 1052 34.3
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 6.2e-100 369.8 1063 34.1
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.8e-99 368.2 1018 36.0
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.2e-99 366.7 1056 34.9
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 3.4e-98 364.0 1124 33.5
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 7.5e-98 362.8 1015 35.1
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 9.8e-98 362.5 1025 35.2
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 4.1e-96 357.1 1073 32.7
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.2e-95 355.5 897 35.5
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 1.2e-95 355.5 817 36.4
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 2.1e-95 354.8 1139 32.5
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 7.8e-95 352.8 1057 33.2
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 7.8e-95 352.8 1046 34.7
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 1.1e-93 349.0 1038 35.0
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 3.3e-93 347.4 1049 33.9
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 2.8e-92 344.4 1110 33.8
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 8.1e-92 342.8 1073 32.5
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 1.4e-91 342.0 703 40.7
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 3.1e-91 340.9 906 35.8
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 6.8e-91 339.7 1088 33.8
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 8.9e-91 339.3 1095 33.0
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 2.0e-90 338.2 1069 33.9
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 2.9e-89 334.3 1096 34.5
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 8.4e-89 332.8 1064 33.4
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 3.2e-88 330.9 1036 34.6
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 1.2e-87 328.9 872 36.1
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.2e-87 328.9 782 38.9
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 3.0e-86 324.3 1046 32.2
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 5.6e-85 320.1 1109 31.4
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 1.6e-84 318.5 1043 31.5
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.8e-84 317.8 711 39.5
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 6.2e-84 316.6 711 39.4
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 1.6e-79 302.0 696 38.2
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 2.3e-78 298.1 704 37.8
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.6e-77 293.5 632 37.7
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.1e-75 287.7 985 34.0
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 9.0e-75 286.2 1054 30.6
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.2e-71 275.8 940 32.1
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.0e-70 272.7 1048 30.9
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.0e-70 272.7 647 38.8
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 6.7e-70 270.0 643 38.4
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 6.2e-68 263.5 849 32.2
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 2.6e-66 258.1 544 40.4
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 2.1e-63 248.4 540 39.4
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.3e-62 245.7 719 33.7
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 6.2e-60 236.9 1009 29.6
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 1.3e-54 219.2 692 33.5
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 2.3e-54 218.4 1059 28.3
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 4.1e-51 207.6 469 36.2
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 3.4e-50 204.5 986 29.4
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.9e-48 198.7 820 30.4
C02p38200 Brassica napus HOM05D003611 ORTHO05D004281 2.7e-47 194.9 174 60.9
BolC2t09835H Brassica oleracea HOM05D003611 ORTHO05D004281 2.7e-47 194.9 174 60.9
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 1.8e-43 182.2 507 35.5
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 7.2e-40 170.2 612 30.1
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.1e-37 162.9 576 32.1
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 3.3e-37 161.4 236 45.8
BcaC03g16055 Brassica carinata HOM05D003611 ORTHO05D004281 4.2e-32 144.4 80 81.2
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 2.1e-31 142.1 189 50.8
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 9.1e-27 126.7 560 29.8
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 2.6e-26 125.2 879 26.1
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 7.2e-24 117.1 190 46.3
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 9.4e-24 116.7 317 35.6
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 3.7e-20 104.8 873 25.4
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 1.8e-19 102.4 186 43.5
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 2.4e-19 102.1 180 43.9
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 1.6e-18 99.4 492 27.0
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 3.5e-18 98.2 390 28.5
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 1.1e-16 93.2 234 35.0
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 7.2e-16 90.5 324 30.9
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 3.6e-15 88.2 193 36.3
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 3.6e-15 88.2 481 27.4
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 6.8e-14 84.0 252 32.1
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.2e-13 83.2 274 32.1
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.5e-13 82.8 249 32.1
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 1.5e-13 82.8 720 24.2
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.3e-12 79.7 247 31.6
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 2.2e-12 79.0 433 28.2
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 4.8e-12 77.8 265 32.1
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 6.3e-12 77.4 510 26.5
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 6.3e-12 77.4 308 29.9
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.2e-10 73.2 285 31.2
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.0e-10 72.4 189 35.4
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 5.9e-10 70.9 114 46.5
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.0e-09 70.1 225 32.0
Duzib268G1133 Durio zibethinus HOM05D003611 ORTHO05D004281 3.2e-08 65.1 142 38.0
BolC5t33940H Brassica oleracea HOM05D000459 ORTHO05D021613 6.1e-07 60.8 35 88.6
BolC5t33941H Brassica oleracea HOM05D000459 ORTHO05D021613 6.1e-07 60.8 35 88.6
C02p57840 Brassica napus HOM05D000459 ORTHO05D021613 1.4e-06 59.7 35 85.7
BolC2t11163H Brassica oleracea HOM05D000459 ORTHO05D021613 1.8e-06 59.3 35 85.7
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 2.3e-06 58.9 82 45.1
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 3.0e-06 58.5 129 35.7
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 6.8e-06 57.4 160 33.8


User provided reference genes

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