Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 4.9e-94 347.8 179 100.0
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 6.6e-91 337.4 180 97.8
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-89 333.2 179 96.1
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-88 330.1 179 95.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-88 330.1 179 95.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-88 330.1 179 95.5
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 5.8e-79 297.7 179 88.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.3e-75 285.8 179 82.1
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.1e-72 275.4 178 78.7
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.6e-60 235.0 181 71.3
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 6.7e-59 231.1 181 69.6
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.3e-58 228.8 176 67.0
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.6e-57 226.5 186 67.7
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.7e-57 225.3 165 67.9
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.3e-56 221.5 177 63.8
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 3.4e-55 218.8 176 63.6
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 7.6e-55 217.6 177 63.8
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.0e-54 217.2 174 63.8
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 8.4e-54 214.2 176 63.1
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 8.4e-54 214.2 176 63.1
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.9e-53 213.0 179 67.0
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 7.1e-53 211.1 181 69.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 7.1e-53 211.1 177 62.7
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 7.1e-53 211.1 177 62.7
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.5e-50 203.4 175 60.6
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.3e-50 202.2 175 59.4
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.3e-49 200.3 182 59.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.3e-49 200.3 176 60.8
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.8e-49 199.1 176 60.2
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 3.7e-49 198.7 176 60.2
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.0e-43 180.6 134 73.1
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.3e-43 179.5 173 57.2
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.2e-41 172.9 139 69.1
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 8.8e-35 151.0 183 51.9
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.5e-34 150.2 175 48.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.7e-34 148.3 189 46.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.7e-34 147.5 189 46.6
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-33 146.4 193 45.1
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.2e-33 146.4 170 48.2
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 6.3e-33 144.8 163 46.6
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.2e-33 144.4 168 47.0
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-32 144.1 180 50.0
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 3.1e-32 142.5 189 48.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 3.5e-31 139.0 170 48.2
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 7.7e-31 137.9 182 42.9
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.7e-30 136.7 187 46.0
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.7e-30 136.7 186 46.2
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 2.2e-30 136.3 202 39.1
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.5e-30 134.4 175 44.0
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.5e-29 133.7 186 45.7
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.2e-29 132.1 179 43.6
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.5e-29 131.7 185 39.5
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.2e-28 130.6 182 44.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.6e-28 130.2 185 43.8
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-28 130.2 181 43.6
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.6e-28 130.2 181 43.6
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 2.1e-28 129.8 176 44.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.7e-28 129.4 192 44.8
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 3.6e-28 129.0 176 43.2
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 8.0e-28 127.9 181 43.1
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.0e-27 127.5 180 43.3
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.4e-27 127.1 197 39.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.8e-27 126.7 185 43.2
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.8e-27 126.7 183 42.6
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.8e-27 126.7 187 40.6
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.3e-27 126.3 189 45.5
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 2.3e-27 126.3 162 48.1
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 3.0e-27 125.9 184 43.5
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 3.0e-27 125.9 181 43.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.0e-27 125.9 167 45.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.2e-27 125.2 187 40.6
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.7e-27 124.8 177 44.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-27 124.4 178 42.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.5e-26 123.6 181 40.9
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.0e-26 123.2 182 43.4
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.0e-26 123.2 187 42.8
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.6e-26 122.9 175 49.1
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 2.6e-26 122.9 186 44.6
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.3e-26 122.5 183 44.3
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.3e-26 122.5 176 48.3
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-26 122.1 175 42.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 5.7e-26 121.7 185 41.6
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 5.7e-26 121.7 176 44.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 7.4e-26 121.3 176 47.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 7.4e-26 121.3 176 44.3
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 9.7e-26 120.9 174 46.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 9.7e-26 120.9 196 40.8
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.3e-25 120.6 171 40.4
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.3e-25 120.6 184 40.8
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.3e-25 120.6 188 37.8
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.3e-25 120.6 181 43.1
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.7e-25 120.2 167 46.1
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.7e-25 120.2 192 39.6
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.2e-25 119.8 183 41.0
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 3.7e-25 119.0 185 41.6
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.8e-25 118.6 180 43.3
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 4.8e-25 118.6 176 46.0
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-24 117.5 190 35.8
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.4e-24 117.1 182 42.3
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-24 115.9 175 41.7
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.1e-24 115.9 196 36.7
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.1e-24 115.9 165 43.6
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-24 115.5 181 44.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 5.3e-24 115.2 184 41.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 5.3e-24 115.2 177 43.5
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 5.3e-24 115.2 187 40.6
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 7.0e-24 114.8 207 36.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 9.1e-24 114.4 176 39.2
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.2e-23 114.0 175 42.9
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.2e-23 114.0 187 39.0
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.6e-23 113.6 183 38.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-23 113.2 161 44.7
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.0e-23 113.2 184 42.4
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.5e-23 112.5 189 37.6
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 4.5e-23 112.1 166 43.4
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 4.5e-23 112.1 186 39.2
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.9e-23 111.7 172 42.4
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 7.7e-23 111.3 180 38.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-22 110.5 181 43.1
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.7e-22 110.2 184 40.8
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.9e-22 109.4 179 41.3
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.8e-22 109.0 176 38.1
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.0e-22 108.6 215 36.7
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 5.0e-22 108.6 167 39.5
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 6.5e-22 108.2 195 38.5
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.9e-21 106.7 183 41.0
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.9e-21 106.7 193 37.8
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.5e-21 106.3 179 39.1
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.5e-21 105.1 189 40.2
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 9.4e-21 104.4 186 38.2
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 9.4e-21 104.4 175 39.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.6e-20 103.6 168 40.5
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.6e-20 103.6 196 39.3
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.6e-20 103.6 196 39.3
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 2.1e-20 103.2 171 40.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.6e-20 102.4 189 39.7
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.6e-20 102.4 181 37.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.7e-20 102.1 157 44.6
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 6.1e-20 101.7 214 34.1
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 6.1e-20 101.7 183 37.7
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-19 100.9 182 35.7
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.0e-19 99.4 206 34.0
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.8e-19 98.2 167 39.5
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.2e-18 97.4 174 33.9
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.0e-18 96.7 165 41.8
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.3e-17 94.0 170 40.0
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 4.8e-17 92.0 168 39.3
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.3e-17 91.3 142 40.8
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-16 90.9 159 41.5
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.4e-16 90.5 173 34.7
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 5.4e-16 88.6 173 34.1
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.7e-15 86.3 181 34.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.7e-14 83.6 152 36.8
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.0e-14 82.0 151 39.1
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-13 80.9 175 34.3
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.5e-13 79.7 162 38.9
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.2e-13 79.0 132 37.9
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 4.2e-13 79.0 205 33.7
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 7.2e-13 78.2 212 33.5
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.0e-11 74.3 169 32.5
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.0e-11 74.3 101 44.6
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 5.7e-10 68.6 206 32.0
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-09 66.2 110 35.5
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.9e-09 65.5 142 38.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-08 63.9 88 39.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-08 62.8 90 37.8
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 4.1e-08 62.4 205 30.2
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 7.7e-07 58.2 68 45.6
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-06 57.0 93 36.6
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.7e-06 57.0 194 32.0
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.7e-06 57.0 119 31.9
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.8e-06 55.8 176 30.7
HPP92_025188 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.8e-06 55.8 164 32.9
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.0e-06 55.5 175 33.7


User provided reference genes

Program Settings