Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 6.4e-48 193.7 97 100.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 2.9e-32 141.7 85 85.9
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 3.2e-31 138.3 85 84.7
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.6e-30 136.0 87 83.9
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.1e-30 135.6 87 82.8
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 3.5e-30 134.8 86 83.7
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 2.3e-29 132.1 85 81.2
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 2.3e-29 132.1 85 81.2
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-28 129.8 83 80.7
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 9.6e-28 126.7 87 75.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.3e-27 126.3 84 77.4
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.3e-27 126.3 87 79.3
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.4e-26 122.9 87 75.9
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 2.4e-26 122.1 83 79.5
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.4e-26 122.1 83 79.5
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.9e-24 115.2 80 76.2
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 3.8e-24 114.8 80 76.2
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 3.2e-23 111.7 81 74.1
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 5.1e-21 104.4 87 66.7
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.5e-20 102.8 73 75.3
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 7.4e-20 100.5 73 72.6
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 7.4e-20 100.5 73 72.6
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 3.7e-19 98.2 82 63.4
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.8e-19 97.8 84 63.1
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-18 96.7 87 59.8
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.8e-18 95.9 96 55.2
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 9.0e-18 93.6 87 57.5
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 9.0e-18 93.6 87 57.5
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 9.0e-18 93.6 87 57.5
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.2e-17 93.2 85 56.5
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.5e-17 92.8 87 57.5
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.5e-17 92.8 89 58.4
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.5e-17 92.8 87 57.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.5e-17 92.8 87 57.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.5e-17 92.8 89 58.4
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.0e-17 92.4 87 57.5
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.4e-17 91.7 85 57.6
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 3.4e-17 91.7 87 56.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 3.4e-17 91.7 82 58.5
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.4e-17 91.7 87 57.5
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.4e-17 91.7 87 57.5
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 4.5e-17 91.3 87 56.3
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.8e-17 90.9 87 56.3
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 5.8e-17 90.9 87 57.5
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 7.6e-17 90.5 86 55.8
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.6e-17 90.5 87 57.5
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.0e-16 90.1 91 58.2
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.3e-16 89.7 86 55.8
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.3e-16 89.7 87 56.3
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.9e-16 88.6 86 54.7
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 2.9e-16 88.6 89 59.6
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.8e-16 88.2 87 55.2
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.8e-16 88.2 85 55.3
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.8e-16 88.2 89 58.4
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 4.9e-16 87.8 92 56.5
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.9e-16 87.8 85 57.6
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 4.9e-16 87.8 87 52.9
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 6.5e-16 87.4 89 57.3
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 6.5e-16 87.4 90 55.6
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 8.4e-16 87.0 87 54.0
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.4e-16 87.0 85 56.5
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 8.4e-16 87.0 99 50.5
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.1e-15 86.7 88 56.8
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.4e-15 86.3 95 52.6
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.4e-15 86.3 82 57.3
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.9e-15 85.9 45 91.1
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.9e-15 85.9 95 52.6
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-15 85.9 95 52.6
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.9e-15 85.9 89 56.2
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.5e-15 85.5 86 53.5
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 2.5e-15 85.5 87 55.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.5e-15 85.5 87 54.0
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.5e-15 85.5 89 52.8
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.5e-15 85.5 85 54.1
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 3.2e-15 85.1 90 55.6
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.2e-15 85.1 83 55.4
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 5.5e-15 84.3 85 56.5
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 5.5e-15 84.3 89 58.4
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 9.3e-15 83.6 89 53.9
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 9.3e-15 83.6 85 52.9
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 9.3e-15 83.6 87 52.9
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 9.3e-15 83.6 87 52.9
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.2e-14 83.2 90 54.4
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.2e-14 83.2 86 52.3
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 1.2e-14 83.2 85 52.9
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.2e-14 83.2 84 52.4
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.6e-14 82.8 87 54.0
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.6e-14 82.8 88 51.1
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.6e-14 82.8 88 51.1
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.6e-14 82.8 89 56.2
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.1e-14 82.4 87 55.2
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.1e-14 82.4 89 55.1
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.1e-14 82.4 85 52.9
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.7e-14 82.0 86 54.7
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.7e-14 82.0 88 54.5
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 3.5e-14 81.6 85 54.1
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.5e-14 81.6 88 53.4
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 4.6e-14 81.3 85 55.3
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.6e-14 81.3 86 52.3
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.6e-14 81.3 86 52.3
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 4.6e-14 81.3 91 52.7
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 6.0e-14 80.9 87 52.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 6.0e-14 80.9 89 57.3
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 7.9e-14 80.5 89 53.9
BraA03t12266Z Brassica rapa HOM05D044247 ORTHO05D042649 1.0e-13 80.1 41 95.1
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.0e-13 80.1 88 53.4
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.0e-13 80.1 84 53.6
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.0e-13 80.1 89 57.3
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.0e-13 80.1 90 53.3
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.0e-13 80.1 90 53.3
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.0e-13 80.1 89 58.4
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.0e-13 80.1 86 54.7
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.0e-13 80.1 86 54.7
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.3e-13 79.7 87 51.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.3e-13 79.0 90 51.1
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.3e-13 79.0 86 51.2
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 3.0e-13 78.6 84 54.8
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 3.0e-13 78.6 88 54.5
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 3.0e-13 78.6 96 52.1
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 3.9e-13 78.2 92 53.3
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.9e-13 78.2 88 55.7
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 5.1e-13 77.8 88 51.1
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 5.1e-13 77.8 91 54.9
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 5.1e-13 77.8 87 51.7
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 5.1e-13 77.8 89 52.8
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 6.7e-13 77.4 88 51.1
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 6.7e-13 77.4 89 49.4
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 6.7e-13 77.4 89 49.4
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 8.7e-13 77.0 84 53.6
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 8.7e-13 77.0 104 47.1
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.1e-12 76.6 86 51.2
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.1e-12 76.6 84 51.2
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.9e-12 75.9 120 41.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 2.5e-12 75.5 84 50.0
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 2.5e-12 75.5 88 53.4
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 4.3e-12 74.7 93 50.5
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 7.4e-12 73.9 90 51.1
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 9.7e-12 73.6 59 57.6
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 9.7e-12 73.6 76 53.9
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.3e-11 73.2 118 39.0
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.6e-11 72.8 87 51.7
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.6e-11 72.8 91 52.7
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.6e-11 72.8 88 51.1
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.8e-11 72.0 88 52.3
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.8e-11 72.0 86 48.8
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.8e-11 72.0 88 52.3
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.7e-11 71.6 96 46.9
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 3.7e-11 71.6 90 51.1
C03p37660 Brassica napus HOM05D044247 ORTHO05D042649 4.8e-11 71.2 38 92.1
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.1e-10 68.6 92 47.8
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 9.0e-10 67.0 97 44.3
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.5e-09 66.2 82 48.8
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.5e-09 64.7 80 43.8
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.0e-08 63.5 87 46.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.4e-07 59.7 53 56.6
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.4e-07 59.7 43 60.5
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.5e-07 57.8 93 36.6
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 7.2e-07 57.4 92 43.5
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 9.3e-07 57.0 108 38.0
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.6e-06 56.2 40 60.0


User provided reference genes

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