Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-219 765.4 400 100.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.4e-208 729.6 450 87.8
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.5e-191 671.8 435 85.1
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.9e-185 652.1 424 84.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 7.4e-181 637.5 424 82.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.2e-150 535.0 442 69.0
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-139 500.0 438 64.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-137 493.4 438 64.2
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-136 490.7 436 64.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-132 476.5 443 63.0
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.4e-131 471.9 443 62.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-130 470.7 443 62.3
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 4.3e-128 462.2 502 56.0
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.9e-124 449.5 446 59.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.1e-123 445.7 447 58.4
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 6.6e-121 438.3 604 47.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-112 410.6 439 55.6
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-89 334.7 417 50.6
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-87 327.4 426 49.1
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-86 324.3 397 47.9
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 3.1e-86 323.2 417 49.4
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.5e-85 319.3 430 47.9
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.7e-84 317.4 417 48.4
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.6e-82 309.3 409 47.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 6.7e-81 305.4 411 48.2
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.7e-81 305.4 411 46.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 9.6e-80 301.6 413 47.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.1e-79 300.4 409 48.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-78 297.4 413 45.8
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-78 297.4 420 44.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.4e-78 297.0 444 43.5
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.5e-77 294.3 424 45.0
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.3e-73 281.2 413 45.0
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 5.1e-73 279.3 395 44.8
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.1e-70 271.6 415 45.3
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.4e-70 271.2 424 42.9
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.2e-69 268.1 242 63.6
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.5e-69 267.7 351 49.6
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-68 265.0 393 44.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.7e-63 247.7 376 43.1
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.9e-62 242.3 356 43.5
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.5e-59 232.6 427 38.6
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.7e-58 230.3 434 36.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.6e-58 229.9 426 38.0
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 3.6e-58 229.9 441 37.4
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 6.1e-58 229.2 432 37.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.0e-57 228.4 444 35.4
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.0e-57 228.4 444 35.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.4e-57 228.0 245 54.7
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.8e-57 227.6 433 37.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.8e-57 227.6 427 37.9
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.0e-57 226.9 444 35.1
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 8.8e-57 225.3 439 36.2
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.5e-56 224.6 459 36.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.5e-56 224.6 441 37.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.7e-56 222.6 444 34.9
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 7.4e-56 222.2 426 36.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.2e-55 220.7 437 36.4
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.7e-55 219.9 440 35.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.8e-55 219.5 446 35.4
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 4.8e-55 219.5 447 36.5
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 8.2e-55 218.8 431 36.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 8.2e-55 218.8 440 35.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.1e-54 218.4 447 35.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-54 218.0 441 36.7
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.4e-54 218.0 441 36.7
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-54 217.6 445 34.4
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.4e-54 217.2 442 36.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.1e-54 216.9 440 35.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 4.1e-54 216.5 436 35.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 5.3e-54 216.1 431 35.3
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 3.5e-53 213.4 219 54.8
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.5e-53 213.0 451 35.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.3e-52 211.5 446 33.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.3e-52 211.5 449 34.5
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.2e-52 210.7 431 35.3
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.9e-52 210.3 427 35.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 5.0e-52 209.5 446 35.7
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 5.0e-52 209.5 440 34.8
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 6.5e-52 209.1 425 34.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 6.5e-52 209.1 426 35.7
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.9e-51 207.6 465 34.4
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 5.5e-51 206.1 444 34.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 5.5e-51 206.1 410 35.6
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.4e-51 205.3 391 36.3
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 9.4e-51 205.3 441 34.0
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.4e-51 205.3 366 39.6
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.2e-50 204.9 416 36.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.6e-50 204.5 438 34.2
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.7e-50 203.8 441 34.0
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 6.1e-50 202.6 439 34.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 8.0e-50 202.2 438 33.8
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 8.0e-50 202.2 426 34.3
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.0e-49 201.8 431 32.9
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.4e-49 201.4 397 36.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.0e-49 200.3 451 32.6
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 5.2e-49 199.5 440 34.3
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 8.8e-49 198.7 439 33.0
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-48 198.4 408 33.6
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-48 198.4 408 33.6
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.1e-48 198.4 444 33.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.4e-48 196.4 275 45.5
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 4.4e-48 196.4 436 34.4
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 5.7e-48 196.1 437 33.9
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.8e-47 193.7 438 32.6
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.7e-47 193.4 437 32.3
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.8e-47 193.0 465 32.5
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.4e-46 191.4 388 35.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.4e-46 191.4 401 35.9
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 2.4e-46 190.7 451 31.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-46 190.3 382 37.2
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.3e-46 189.5 449 32.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.3e-46 189.5 409 31.3
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 7.0e-46 189.1 424 33.3
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 7.0e-46 189.1 437 33.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 7.7e-45 185.7 366 37.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.3e-44 184.9 438 33.6
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.3e-44 184.9 440 33.0
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.2e-44 184.1 439 31.7
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.8e-44 183.3 242 47.5
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-43 181.8 400 35.0
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.0e-41 175.3 457 31.7
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 3.0e-41 173.7 153 62.7
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.5e-40 171.4 495 29.9
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.7e-39 167.9 134 68.7
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.4e-38 164.1 379 31.9
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.0e-38 162.5 271 40.6
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-37 161.4 166 55.4
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-36 157.1 439 31.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.3e-33 147.5 318 36.2
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 5.2e-33 146.4 473 29.6
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.7e-31 141.4 120 62.5
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 2.8e-31 140.6 450 30.9
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.0e-28 132.1 258 35.3
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.7e-28 131.3 115 57.4
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.2e-27 126.7 173 43.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 5.5e-27 126.3 122 59.0
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 8.0e-26 122.5 225 36.0
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.2e-25 119.8 216 36.1
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.4e-24 117.1 345 27.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.6e-21 108.2 347 30.3
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 9.5e-19 99.0 157 40.8
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-18 97.8 146 43.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 3.6e-18 97.1 83 61.4
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.0e-17 93.6 114 46.5
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.0e-16 91.3 130 40.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.6e-16 90.9 110 47.3
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.3e-15 88.6 163 41.1
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.7e-15 88.2 164 42.1
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.2e-15 87.8 369 25.5
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 3.5e-13 80.5 135 32.6
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.3e-12 77.8 116 44.0
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 4.3e-11 73.6 271 26.2
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.7e-10 70.1 61 54.1
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 4.7e-10 70.1 347 28.5
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.1e-10 69.3 61 55.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 8.9e-09 65.9 139 33.1
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 5.8e-08 63.2 104 33.7
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-07 61.6 96 32.3
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.2e-07 61.2 77 48.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.4e-07 59.7 85 43.5
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-06 58.9 83 42.2
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.9e-06 58.2 58 50.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 5.4e-06 56.6 76 40.8
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 7.1e-06 56.2 86 37.2


User provided reference genes

Program Settings