Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p30820 Brassica napus HOM05D009523 ORTHO05D000721 4.6e-97 357.8 175 100.0
BraA03t12260Z Brassica rapa HOM05D009523 ORTHO05D000721 1.9e-95 352.4 178 98.3
C03p37500 Brassica napus HOM05D009523 ORTHO05D000721 3.3e-95 351.7 175 98.3
BolC3t16043H Brassica oleracea HOM05D009523 ORTHO05D000721 3.4e-92 341.7 187 91.4
BcaC01g06726 Brassica carinata HOM05D009523 ORTHO05D000721 2.6e-84 315.5 175 90.9
Thhalv10029004m.g Eutrema salsugineum HOM05D009523 ORTHO05D000721 2.6e-63 245.7 186 71.5
AL6G50100 Arabidopsis lyrata HOM05D009523 ORTHO05D000721 8.2e-62 240.7 187 69.5
C02p39580 Brassica napus HOM05D009523 ORTHO05D000721 3.5e-60 235.3 185 69.7
A02p25000 Brassica napus HOM05D009523 ORTHO05D000721 5.9e-60 234.6 185 69.7
CARHR251200 Cardamine hirsuta HOM05D009523 ORTHO05D000721 3.8e-59 231.9 188 68.6
Sp6g02860 Schrenkiella parvula HOM05D009523 ORTHO05D000721 1.5e-58 229.9 190 66.3
BraA02t07489Z Brassica rapa HOM05D009523 ORTHO05D000721 1.9e-58 229.6 185 68.6
BcaC03g16182 Brassica carinata HOM05D009523 ORTHO05D000721 5.5e-58 228.0 185 68.1
BolC2t09971H Brassica oleracea HOM05D009523 ORTHO05D000721 5.5e-58 228.0 185 68.1
AT4G02830 Arabidopsis thaliana HOM05D009523 ORTHO05D000721 1.2e-57 226.9 188 68.1
BcaB05g23666 Brassica carinata HOM05D009523 ORTHO05D000721 3.6e-57 225.3 189 67.2
Carub.0006s3422 Capsella rubella HOM05D009523 ORTHO05D000721 2.0e-52 209.5 187 63.1
Aa31LG5G2410 Aethionema arabicum HOM05D009523 ORTHO05D000721 6.6e-35 151.4 183 51.4
A09p02220 Brassica napus HOM05D009523 ORTHO05D000721 3.6e-17 92.4 152 44.7
BraA09t35871Z Brassica rapa HOM05D009523 ORTHO05D000721 3.6e-17 92.4 152 44.7
C09p02310 Brassica napus HOM05D009523 ORTHO05D000721 4.7e-17 92.0 152 44.7
BolC9t53159H Brassica oleracea HOM05D009523 ORTHO05D000721 1.1e-16 90.9 152 44.1
THA.LOC104825998 Tarenaya hassleriana HOM05D009523 ORTHO05D000721 3.1e-16 89.4 148 44.6
BcaC04g24018 Brassica carinata HOM05D009523 ORTHO05D000721 8.9e-16 87.8 140 44.3
Hund05343 Selenicereus undatus HOM05D001128 ORTHO05D000721 1.1e-13 80.9 189 36.5
Thecc.01G280100 Theobroma cacao HOM05D001128 ORTHO05D000721 2.4e-13 79.7 187 36.4
MD11G1286400 Malus domestica HOM05D001128 ORTHO05D000721 9.2e-13 77.8 187 36.9
Potri.005G208800 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.2e-12 77.4 190 34.7
Prupe.8G241700 Prunus persica HOM05D001128 ORTHO05D000721 1.6e-12 77.0 190 34.7
Sc17g0004110 Simmondsia chinensis HOM05D001128 ORTHO05D000721 2.1e-12 76.6 193 34.2
CiPaw.08G105000 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.5e-12 75.9 113 47.8
Duzib138G1095 Durio zibethinus HOM05D001128 ORTHO05D000721 4.6e-12 75.5 181 38.7
Gohir.D08G204000 Gossypium hirsutum HOM05D009523 ORTHO05D000721 6.0e-12 75.1 180 36.1
Gorai.004G080700 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.0e-12 75.1 200 31.5
Gorai.004G216000 Gossypium raimondii HOM05D009523 ORTHO05D000721 6.0e-12 75.1 176 35.2
Potri.002G053700 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.0e-11 74.3 187 36.4
Atru.chr5.1430 Acer truncatum HOM05D001128 ORTHO05D000721 1.3e-11 73.9 187 32.6
arahy.Tifrunner.gnm1.ann1.S3CEFB Arachis hypogaea HOM05D001128 ORTHO05D000721 1.7e-11 73.6 205 31.7
Lj1g0006514 Lotus japonicus HOM05D001128 ORTHO05D000721 1.7e-11 73.6 181 35.9
Lalb_Chr06g0163041 Lupinus albus HOM05D001128 ORTHO05D000721 2.3e-11 73.2 188 31.4
Phvul.001G150600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.0e-11 72.8 188 32.4
Dinv32942 Davidia involucrata HOM05D001128 ORTHO05D000721 3.9e-11 72.4 103 46.6
Ciclev10023667m.g Citrus clementina HOM05D001128 ORTHO05D000721 5.1e-11 72.0 178 37.1
Glyma.19G155600 Glycine max HOM05D001128 ORTHO05D000721 6.6e-11 71.6 189 32.8
PGR044G1404 Punica granatum HOM05D001128 ORTHO05D000721 8.6e-11 71.2 118 42.4
QL12p021827 Quercus lobata HOM05D001128 ORTHO05D000721 8.6e-11 71.2 111 43.2
Gohir.A08G185900 Gossypium hirsutum HOM05D009523 ORTHO05D000721 1.1e-10 70.9 176 34.7
Sabra05G0158900 Salix brachista HOM05D001128 ORTHO05D000721 1.9e-10 70.1 112 44.6
Glyma.02G147700 Glycine max HOM05D001128 ORTHO05D000721 2.5e-10 69.7 189 31.7
Haze_04722 Corylus avellana HOM05D001128 ORTHO05D000721 3.3e-10 69.3 66 63.6
SalBow4G1333 Salvia bowleyana HOM05D001128 ORTHO05D000721 4.3e-10 68.9 113 46.0
MD03G1266000 Malus domestica HOM05D001128 ORTHO05D000721 7.3e-10 68.2 183 37.7
Glyma.03G153200 Glycine max HOM05D001128 ORTHO05D000721 9.6e-10 67.8 188 30.9
HanXRQChr01g0003181 Helianthus annuus HOM05D001128 ORTHO05D000721 9.6e-10 67.8 162 32.7
QL12p021963 Quercus lobata HOM05D001128 ORTHO05D000721 1.2e-09 67.4 111 42.3
Duzib211G0347 Durio zibethinus HOM05D001128 ORTHO05D000721 1.6e-09 67.0 114 41.2
Glyma.10G026100 Glycine max HOM05D001128 ORTHO05D000721 2.1e-09 66.6 192 30.2
Gohir.D08G076400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.8e-09 66.2 198 30.3
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 3.6e-09 65.9 151 33.8
RcHm_v2.0_Chr6g0291121 Rosa chinensis HOM05D001128 ORTHO05D000721 3.6e-09 65.9 166 34.3
Actinidia21110 Actinidia chinensis HOM05D001128 ORTHO05D000721 4.7e-09 65.5 128 40.6
HPP92_018175 Vanilla planifolia HOM05D001128 ORTHO05D000721 6.2e-09 65.1 119 40.3
CANSAT25G3618 Cannabis sativa HOM05D001128 ORTHO05D000721 8.1e-09 64.7 200 33.0
Cpa.g.sc52.31 Carica papaya HOM05D001128 ORTHO05D000721 8.1e-09 64.7 182 35.7
Sabra02G0043700 Salix brachista HOM05D001128 ORTHO05D000721 8.1e-09 64.7 196 34.2
Nn1g02211 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.4e-08 63.9 117 39.3
Phvul.007G171600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.1e-08 62.8 191 30.9
MELO3C015842.2 Cucumis melo HOM05D001128 ORTHO05D000721 4.0e-08 62.4 119 39.5
Migut.D00291 Erythranthe guttata HOM05D001128 ORTHO05D000721 4.0e-08 62.4 115 44.3
TAR633G0329 Trochodendron aralioides HOM05D001128 ORTHO05D000721 4.0e-08 62.4 195 33.8
Lsat_1_v5_gn_5_188320 Lactuca sativa HOM05D001128 ORTHO05D000721 5.2e-08 62.0 161 34.2
Manes.05G075700 Manihot esculenta HOM05D001128 ORTHO05D000721 5.2e-08 62.0 112 42.0
FvH4_2g23650 Fragaria vesca HOM05D001128 ORTHO05D000721 6.8e-08 61.6 172 31.4
ClCG09G006980 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.5e-07 60.5 116 38.8
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 1.5e-07 60.5 119 36.1
FAN15G2738 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.5e-07 60.5 172 30.8
Nitab4.5_0002823g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.5e-07 60.5 134 37.3
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 1.5e-07 60.5 175 35.4
Manes.01G208200 Manihot esculenta HOM05D001128 ORTHO05D000721 2.0e-07 60.1 180 34.4
Os01g0850000 Oryza sativa ssp. japonica HOM05D001128 ORTHO05D000721 2.0e-07 60.1 144 38.2
SGA_v2.0_scaffold1G00467 Striga asiatica HOM05D001128 ORTHO05D000721 2.0e-07 60.1 116 40.5
GSVIVG01011088001 Vitis vinifera HOM05D001128 ORTHO05D000721 2.0e-07 60.1 232 30.6
Zm00001eb367680 Zea mays HOM05D001128 ORTHO05D000721 2.0e-07 60.1 70 52.9
FAN24G2693 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.6e-07 59.7 172 31.4
VMungo0720G0300 Vigna mungo HOM05D001128 ORTHO05D000721 2.6e-07 59.7 194 29.9
Nitab4.5_0000652g0060 Nicotiana tabacum HOM05D001128 ORTHO05D000721 3.4e-07 59.3 157 35.0
Oeu028076.1 Olea europaea HOM05D001128 ORTHO05D000721 4.4e-07 58.9 103 42.7
Actinidia24889 Actinidia chinensis HOM05D000300 ORTHO05D000383 5.8e-07 58.5 143 36.4
CsaV3_7G028180 Cucumis sativus L. HOM05D001128 ORTHO05D000721 5.8e-07 58.5 201 30.8
Gohir.A08G067900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 5.8e-07 58.5 144 33.3
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 5.8e-07 58.5 70 52.9
Sed0019989 Sechium edule HOM05D001128 ORTHO05D000721 5.8e-07 58.5 116 38.8
Aqoxy2G03314 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 7.6e-07 58.2 203 32.5
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 7.6e-07 58.2 121 38.0
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 7.6e-07 58.2 119 37.8
ECA236G1683 Erigeron canadensis HOM05D001128 ORTHO05D000721 7.6e-07 58.2 109 41.3
FAN20G0154 Fragaria x ananassa HOM05D001128 ORTHO05D000721 7.6e-07 58.2 174 31.0
FAN27G0408 Fragaria x ananassa HOM05D001128 ORTHO05D000721 7.6e-07 58.2 174 31.0
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 7.6e-07 58.2 126 32.5
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 9.9e-07 57.8 144 34.7
Medtr1g072310 Medicago truncatula HOM05D001128 ORTHO05D000721 9.9e-07 57.8 187 29.4
Psat6g060440 Pisum sativum HOM05D001128 ORTHO05D000721 9.9e-07 57.8 207 30.0
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 1.3e-06 57.4 119 38.7
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.3e-06 57.4 126 32.5
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 1.3e-06 57.4 133 36.1
Oeu028077.1 Olea europaea HOM05D001128 ORTHO05D000721 1.3e-06 57.4 103 41.7
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 1.3e-06 57.4 136 38.2
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 1.3e-06 57.4 136 38.2
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 1.3e-06 57.4 122 38.5
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.7e-06 57.0 147 32.7
PSO541G6419 Papaver somniferum HOM05D001128 ORTHO05D000721 1.7e-06 57.0 175 31.4
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.2e-06 56.6 104 40.4
arahy.Tifrunner.gnm1.ann1.463IUL Arachis hypogaea HOM05D001128 ORTHO05D000721 2.9e-06 56.2 159 35.2
MSTRG.10240 Avicennia marina HOM05D001128 ORTHO05D000721 2.9e-06 56.2 126 34.9
Peaxi162Scf00009g03319 Petunia axillaris HOM05D001128 ORTHO05D000721 2.9e-06 56.2 134 33.6
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 3.8e-06 55.8 126 34.9
Zm00001eb147910 Zea mays HOM05D001128 ORTHO05D000721 3.8e-06 55.8 57 56.1
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 4.9e-06 55.5 160 35.6
Nn4g26238 Nelumbo nucifera HOM05D001128 ORTHO05D000721 4.9e-06 55.5 194 30.9
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 6.4e-06 55.1 114 38.6
arahy.Tifrunner.gnm1.ann1.KBQI3L Arachis hypogaea HOM05D001128 ORTHO05D000721 6.4e-06 55.1 159 35.2
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 6.4e-06 55.1 119 39.5
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.4e-06 55.1 161 34.2
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.4e-06 55.1 161 34.2
Manes.07G123000 Manihot esculenta HOM05D001128 ORTHO05D000721 6.4e-06 55.1 102 37.3
unitig_746.g26718 Utricularia gibba HOM05D001128 ORTHO05D000721 6.4e-06 55.1 137 35.0
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 8.4e-06 54.7 157 35.7


User provided reference genes

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