Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 7.7e-228 793.5 411 100.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 5.7e-223 777.3 415 97.3
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 7.5e-215 750.4 419 93.8
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.2e-214 748.8 419 93.6
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.6e-204 714.5 419 88.8
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 5.1e-187 657.9 419 84.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.9e-186 656.0 425 81.9
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 7.3e-186 654.1 424 82.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.2e-181 638.6 425 80.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.0e-166 590.5 424 75.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.1e-165 584.3 423 75.9
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.2e-148 530.4 428 66.8
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.5e-117 425.2 423 58.6
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 7.2e-117 424.9 423 57.7
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.0e-111 406.8 410 57.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.6e-106 389.8 404 58.7
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 7.0e-104 381.7 405 55.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.9e-102 375.9 399 56.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.9e-101 373.6 418 53.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.2e-89 333.6 427 45.4
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.6e-87 327.4 426 45.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-86 324.3 172 98.3
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.7e-86 323.9 426 45.8
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.2e-84 317.8 425 43.5
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 8.1e-84 315.1 429 44.8
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 8.9e-83 311.6 431 43.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.5e-82 310.8 424 42.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.5e-82 310.8 428 45.6
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 5.8e-82 308.9 421 43.9
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 8.4e-81 305.1 434 41.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.4e-80 304.3 434 43.5
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-80 303.9 428 43.7
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 3.2e-80 303.1 432 42.6
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 7.8e-79 298.5 402 49.5
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.3e-78 297.0 436 43.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.1e-77 294.7 430 41.4
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.5e-77 294.3 429 41.0
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.1e-75 288.1 424 41.5
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.4e-75 287.7 425 41.9
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.0e-75 286.2 442 40.5
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.7e-73 280.8 422 40.3
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.8e-73 279.6 441 39.5
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.9e-72 277.3 425 42.4
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-71 274.2 430 40.2
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.0e-70 270.0 435 38.2
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.5e-69 266.9 424 40.1
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.3e-69 266.2 430 39.3
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 7.3e-69 265.4 414 41.3
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.6e-69 265.0 430 39.1
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.6e-68 264.2 397 40.8
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.6e-68 263.1 421 41.6
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.2e-68 262.3 421 41.3
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 6.2e-68 262.3 426 39.7
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.4e-67 261.2 421 41.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.4e-67 260.4 426 39.4
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.1e-67 260.0 457 36.8
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.0e-67 259.6 421 41.1
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 4.4e-66 256.1 429 41.0
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 9.9e-66 255.0 424 40.1
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.4e-65 251.9 421 40.4
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 8.4e-65 251.9 416 38.7
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.1e-64 251.5 362 41.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 7.1e-64 248.8 353 42.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 6.0e-63 245.7 394 44.7
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.6e-62 242.3 437 37.5
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.6e-60 237.7 412 36.9
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.1e-60 237.3 159 80.5
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 6.2e-60 235.7 159 79.9
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 6.2e-60 235.7 159 79.9
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.2e-60 235.7 412 40.0
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.1e-59 235.0 429 39.6
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.4e-59 234.6 426 37.6
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.8e-59 234.2 424 38.0
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.4e-59 233.8 424 35.1
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 4.0e-59 233.0 387 38.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 5.3e-59 232.6 159 79.9
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 5.3e-59 232.6 433 36.7
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 6.9e-59 232.3 404 37.4
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.9e-59 232.3 449 36.5
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.2e-58 231.5 429 38.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.0e-58 230.7 403 37.7
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.0e-58 230.7 426 36.6
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.0e-58 230.7 436 36.5
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.8e-58 229.2 335 40.6
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.8e-58 229.2 411 37.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 5.8e-58 229.2 403 36.7
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.7e-57 227.6 438 36.5
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.9e-57 226.9 443 35.4
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.1e-56 224.9 436 35.8
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.1e-56 224.9 438 36.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.9e-56 224.2 441 35.8
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.2e-56 223.4 369 38.5
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 5.5e-56 222.6 437 36.6
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 2.1e-55 220.7 419 35.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.1e-55 220.7 413 37.0
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.5e-55 219.9 423 33.3
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 3.5e-55 219.9 408 39.7
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 6.0e-55 219.2 423 33.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 7.9e-55 218.8 441 35.8
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 3.0e-54 216.9 148 79.7
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 3.9e-54 216.5 423 36.2
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 3.9e-54 216.5 428 37.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 5.1e-54 216.1 417 36.5
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.1e-53 214.9 413 35.6
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.5e-53 213.8 314 43.0
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.5e-53 213.8 427 34.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.6e-52 211.1 413 36.1
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.8e-52 210.3 437 35.2
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-51 208.4 430 35.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.4e-51 208.0 423 35.2
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.8e-51 207.6 403 36.0
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 9.0e-51 205.3 353 37.7
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.2e-50 204.9 428 35.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.5e-50 203.0 427 36.1
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.5e-50 203.0 427 36.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.0e-49 201.8 427 34.4
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.3e-49 201.4 429 34.0
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.3e-49 201.4 422 34.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.9e-49 199.5 355 36.1
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.5e-48 197.2 404 35.1
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 4.2e-48 196.4 431 34.8
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.7e-47 193.7 430 34.4
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.3e-46 190.7 202 58.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.5e-45 188.0 428 32.2
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 2.8e-44 183.7 425 32.7
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 6.3e-44 182.6 484 31.4
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 8.4e-41 172.2 418 31.8
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 2.5e-40 170.6 405 31.9
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.2e-40 170.2 266 40.2
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.1e-39 167.5 352 35.2
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 6.1e-39 166.0 266 38.7
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.9e-37 161.0 174 50.0
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.3e-37 160.2 130 70.8
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.0e-34 151.0 370 31.9
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 5.5e-32 142.9 338 33.4
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 2.5e-29 134.0 261 36.4
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.3e-29 133.3 418 28.5
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.8e-28 129.8 419 27.7
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.4e-27 127.5 406 30.0
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.7e-20 104.8 70 70.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.7e-20 104.8 70 70.0
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 6.3e-20 102.8 214 34.6
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 9.1e-19 99.0 67 71.6
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 9.1e-19 99.0 67 71.6
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 9.1e-19 99.0 67 71.6
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.6e-18 97.4 83 59.0
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 5.9e-18 96.3 62 71.0
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 5.0e-17 93.2 368 27.7
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 8.5e-17 92.4 76 61.8
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.2e-15 88.6 95 52.6
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 8.8e-14 82.4 104 47.1
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 3.3e-13 80.5 83 50.6
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 1.3e-12 78.6 60 70.0
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.7e-12 78.2 414 23.4
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 2.2e-12 77.8 52 73.1
BolC5t34111H Brassica oleracea HOM05D004053 ORTHO05D018618 1.8e-11 74.7 47 74.5
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 4.5e-10 70.1 127 37.8
A04p06740 Brassica napus HOM05D004053 ORTHO05D033555 5.9e-10 69.7 39 79.5
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.3e-09 68.6 81 48.1
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 4.2e-08 63.5 259 25.5
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.4e-06 58.5 159 26.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.2e-06 56.6 56 51.8


User provided reference genes

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