Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.7e-70 269.2 140 100.0
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.7e-70 269.2 140 100.0
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.6e-70 266.9 140 98.6
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.6e-70 266.9 140 98.6
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 8.1e-52 207.2 116 94.8
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 4.4e-50 201.4 142 78.2
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 7.6e-50 200.7 147 74.1
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 9.9e-50 200.3 118 87.3
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.4e-48 195.7 139 74.8
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.4e-48 195.7 139 74.8
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.4e-48 195.7 139 75.5
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.7e-47 192.2 121 83.5
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 8.9e-43 177.2 116 78.4
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 1.2e-42 176.8 117 78.6
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 1.2e-42 176.8 117 78.6
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.0e-42 176.0 116 77.6
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.5e-39 165.2 126 72.2
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 3.9e-22 108.6 115 54.8
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 3.3e-21 105.5 113 55.8
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.3e-21 105.1 114 55.3
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.6e-21 104.8 115 53.0
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 3.7e-20 102.1 119 54.6
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 3.7e-20 102.1 119 54.6
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 3.7e-20 102.1 119 54.6
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.1e-19 100.5 116 52.6
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.2e-18 97.1 126 51.6
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 3.4e-18 95.5 115 49.6
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 4.5e-18 95.1 114 50.0
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-17 92.8 120 50.0
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.0e-15 84.7 71 57.7
BcaB05g23718 Brassica carinata HOM05D008153 ORTHO05D004666 5.7e-13 78.2 57 68.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.1e-12 76.3 115 39.1
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.2e-12 74.3 113 40.7
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.1e-11 73.9 112 40.2
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.8e-11 73.2 115 39.1
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.4e-11 72.8 114 38.6
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.0e-10 69.7 104 40.4
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 4.5e-10 68.6 122 38.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 5.9e-10 68.2 115 37.4
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 5.9e-10 68.2 69 50.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 7.6e-10 67.8 111 38.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-09 67.0 117 38.5
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.3e-09 67.0 120 36.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.7e-09 66.6 117 37.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.2e-09 66.2 112 38.4
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.9e-09 65.9 117 37.6
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.9e-09 65.9 117 37.6
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.9e-09 65.9 110 37.3
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 3.8e-09 65.5 117 35.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.8e-09 65.5 68 51.5
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 5.0e-09 65.1 69 50.7
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 5.0e-09 65.1 118 35.6
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.1e-08 63.9 86 40.7
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.1e-08 63.9 69 49.3
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-08 63.5 74 44.6
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.4e-08 63.5 110 38.2
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.9e-08 63.2 117 39.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.9e-08 63.2 117 39.3
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.9e-08 63.2 112 41.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.9e-08 63.2 71 46.5
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.9e-08 63.2 71 46.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.5e-08 62.8 70 45.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.5e-08 62.8 117 36.8
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.5e-08 62.8 110 38.2
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 3.2e-08 62.4 113 35.4
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.2e-08 62.4 70 45.7
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.2e-08 62.0 74 47.3
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 4.2e-08 62.0 68 48.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 5.5e-08 61.6 117 39.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 5.5e-08 61.6 76 46.1
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.2e-08 61.2 68 47.1
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.2e-08 61.2 68 47.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 7.2e-08 61.2 70 44.3
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 9.3e-08 60.8 77 44.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.3e-08 60.8 74 44.6
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.2e-07 60.5 116 36.2
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.6e-07 60.1 117 39.3
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.6e-07 60.1 70 45.7
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.6e-07 60.1 67 44.8
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.1e-07 59.7 111 35.1
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-07 59.7 122 32.8
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.1e-07 59.7 96 38.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.1e-07 59.7 96 38.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-07 59.3 97 36.1
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-07 59.3 106 35.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-07 58.9 117 38.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.6e-07 58.9 101 38.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.6e-07 58.9 101 38.6
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 4.6e-07 58.5 85 41.2
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 4.6e-07 58.5 67 43.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 4.6e-07 58.5 103 37.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 6.1e-07 58.2 114 33.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 6.1e-07 58.2 105 38.1
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-07 58.2 75 46.7
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 6.1e-07 58.2 110 36.4
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.9e-07 57.8 118 34.7
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 7.9e-07 57.8 125 33.6
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.0e-06 57.4 121 35.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.0e-06 57.4 116 36.2
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-06 57.0 115 38.3
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.3e-06 57.0 76 40.8
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.3e-06 57.0 76 40.8
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.8e-06 56.6 66 50.0
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.8e-06 56.6 123 30.9
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.8e-06 56.6 123 30.9
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.3e-06 56.2 91 39.6
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.3e-06 56.2 114 36.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.3e-06 56.2 67 40.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.0e-06 55.8 109 34.9
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 3.0e-06 55.8 88 34.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.9e-06 55.5 68 38.2
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 3.9e-06 55.5 66 45.5
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 3.9e-06 55.5 67 40.3
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-06 55.5 75 45.3
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.9e-06 55.5 75 44.0
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.9e-06 55.5 73 39.7
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.9e-06 55.5 119 33.6
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 5.1e-06 55.1 115 37.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 5.1e-06 55.1 115 31.3
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.1e-06 55.1 74 40.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.7e-06 54.7 69 43.5
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 8.7e-06 54.3 91 36.3
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 8.7e-06 54.3 98 34.7
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.7e-06 54.3 69 43.5


User provided reference genes

Program Settings