Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-160 569.7 277 100.0
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.2e-139 500.0 267 92.9
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 4.7e-136 488.0 259 91.1
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.4e-132 475.7 268 86.9
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 9.1e-132 473.8 262 88.5
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-131 473.4 266 87.6
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.3e-130 469.2 268 85.1
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 3.8e-130 468.4 240 93.3
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 5.0e-130 468.0 268 85.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 6.6e-130 467.6 269 85.5
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 6.6e-130 467.6 269 85.5
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.1e-129 466.8 268 85.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-129 466.1 238 93.7
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.9e-129 466.1 268 85.1
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.5e-129 465.7 267 85.4
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.5e-129 465.7 267 85.4
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.5e-129 465.7 266 85.7
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 6.1e-128 461.1 262 85.9
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 6.1e-128 461.1 268 84.7
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 6.1e-128 461.1 268 84.7
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.1e-120 436.0 257 80.2
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.1e-119 432.2 252 81.0
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.9e-119 430.6 252 80.6
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 5.4e-108 394.8 221 88.2
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 4.4e-102 375.2 253 69.2
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.4e-102 375.2 253 69.2
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.9e-101 372.5 247 70.4
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 5.4e-100 368.2 252 70.2
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.1e-99 366.3 246 69.1
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 2.7e-99 365.9 253 69.2
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.7e-99 365.9 246 67.9
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.7e-99 365.9 253 68.4
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.0e-98 364.0 253 67.2
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.3e-98 363.6 253 68.0
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 3.9e-98 362.1 250 67.2
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 8.6e-98 360.9 251 67.3
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.5e-97 360.1 246 67.5
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.5e-97 359.4 246 67.5
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.3e-97 359.0 254 66.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 5.6e-97 358.2 255 66.3
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 7.3e-97 357.8 253 66.0
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 9.6e-97 357.5 253 66.8
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 9.6e-97 357.5 253 66.0
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 9.6e-97 357.5 250 66.4
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.2e-96 357.1 252 66.7
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.6e-96 356.7 253 66.8
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.6e-96 356.7 253 66.8
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.6e-96 356.7 253 63.6
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 2.1e-96 356.3 251 65.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.1e-96 356.3 250 66.0
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.8e-96 355.9 241 68.0
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.8e-96 355.9 252 65.5
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.8e-96 355.9 290 59.7
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.6e-96 355.5 253 63.2
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 3.6e-96 355.5 253 65.6
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 3.6e-96 355.5 246 66.7
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 4.7e-96 355.1 253 66.0
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.2e-96 354.8 251 66.5
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 6.2e-96 354.8 242 66.9
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 6.2e-96 354.8 253 66.0
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 8.1e-96 354.4 259 64.1
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.1e-95 354.0 253 63.6
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.1e-95 354.0 253 65.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.1e-95 354.0 246 66.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-95 353.6 253 63.2
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 8.9e-95 350.9 261 63.2
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.2e-94 350.5 246 64.2
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.2e-94 350.5 253 64.8
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.5e-94 350.1 241 66.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.0e-94 349.7 246 65.0
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 2.0e-94 349.7 253 64.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 2.6e-94 349.4 251 64.5
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.4e-94 349.0 257 64.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 4.4e-94 348.6 254 65.7
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.4e-94 348.6 251 65.3
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 9.9e-94 347.4 262 62.2
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.7e-93 346.7 241 66.8
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 6.4e-93 344.7 251 62.5
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 8.4e-93 344.4 255 62.7
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.1e-92 344.0 248 65.7
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.1e-92 344.0 248 65.7
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 1.9e-92 343.2 246 63.8
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 1.9e-92 343.2 246 63.8
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.9e-92 343.2 253 64.8
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 3.2e-92 342.4 253 62.8
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.1e-92 341.3 253 63.2
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 7.1e-92 341.3 250 63.2
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 7.1e-92 341.3 249 63.9
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 7.1e-92 341.3 253 63.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 9.3e-92 340.9 242 65.3
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 9.3e-92 340.9 251 64.1
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 2.1e-91 339.7 282 59.9
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 2.7e-91 339.3 253 64.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 3.5e-91 339.0 270 60.4
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.7e-90 336.7 255 60.4
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 2.3e-90 336.3 248 62.1
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.3e-90 336.3 246 63.4
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 3.0e-90 335.9 271 60.5
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 3.0e-90 335.9 252 61.9
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 8.7e-90 334.3 254 61.0
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.9e-89 333.2 261 61.3
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.3e-89 332.4 253 62.8
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.8e-88 329.3 254 60.6
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.9e-87 324.7 242 60.3
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 6.9e-87 324.7 250 62.4
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.0e-86 323.2 241 62.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 3.4e-86 322.4 241 62.7
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.4e-84 317.0 312 51.3
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.4e-84 317.0 263 58.2
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.4e-84 317.0 263 58.2
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.9e-84 316.6 241 62.2
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 4.2e-84 315.5 244 59.8
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 1.6e-83 313.5 263 57.0
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 2.3e-82 309.7 276 55.1
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.0e-82 309.3 253 59.3
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 5.1e-82 308.5 229 62.9
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.9e-77 292.7 256 53.5
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 6.7e-74 281.6 240 55.8
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.7e-74 281.2 191 66.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 8.7e-74 281.2 253 51.4
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.8e-72 276.2 252 53.6
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 4.8e-72 275.4 252 51.2
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.4e-71 273.1 240 52.1
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.9e-69 266.2 251 49.0
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 6.3e-64 248.4 173 65.9
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 1.5e-62 243.8 157 72.6
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.5e-61 238.0 253 49.0
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.6e-59 233.8 260 45.0
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 6.7e-58 228.4 228 51.8
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 4.3e-57 225.7 154 68.8
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 5.7e-57 225.3 154 68.8
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.4e-57 224.9 246 49.2
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 3.6e-43 179.5 127 63.0
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-41 174.5 122 66.4
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 1.7e-40 170.6 90 87.8
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.4e-39 167.5 120 65.0
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.1e-39 166.4 114 66.7
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 7.0e-39 165.2 127 61.4
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.1e-36 157.9 242 37.2
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.5e-36 156.8 107 69.2
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 3.0e-34 149.8 74 90.5
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.0e-29 134.8 106 59.4
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 6.1e-27 125.6 93 72.0
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.4e-26 124.4 174 42.0
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-25 120.9 93 68.8
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 2.0e-25 120.6 272 32.4
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-24 117.5 93 67.7
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 8.3e-24 115.2 286 34.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 7.7e-22 108.6 139 41.7
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 4.2e-20 102.8 52 90.4
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 4.9e-16 89.4 52 86.5
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 5.4e-15 85.9 55 80.0
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 5.9e-14 82.4 76 51.3
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 8.6e-13 78.6 84 45.2
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 5.7e-09 65.9 159 30.2
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.4e-08 62.4 63 44.4
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 7.0e-07 58.9 40 65.0


User provided reference genes

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