Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.4e-127 458.0 235 100.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-101 373.2 239 85.8
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 3.4e-95 352.1 239 83.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 7.6e-95 350.9 238 81.5
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.1e-81 306.2 240 73.8
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-80 303.1 240 74.6
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 2.0e-71 273.1 242 69.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 7.2e-69 264.6 249 67.1
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.8e-67 260.0 245 64.1
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 8.2e-65 251.1 242 63.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 5.1e-51 205.3 296 50.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.1e-48 196.1 145 79.3
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.6e-34 149.8 241 46.9
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.6e-31 140.6 233 44.2
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.8e-30 136.0 235 44.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 5.0e-30 135.6 227 43.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 8.5e-30 134.8 229 43.7
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.5e-29 133.3 238 43.3
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 2.5e-29 133.3 228 44.7
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.5e-29 132.1 236 42.4
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.6e-28 130.6 235 42.6
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.1e-28 130.2 234 45.3
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.7e-28 129.8 227 43.2
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.0e-27 127.9 232 44.0
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.0e-27 127.9 235 42.1
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.4e-27 127.5 236 41.9
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.8e-27 127.1 241 43.2
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-27 127.1 238 41.2
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.3e-27 126.7 209 45.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.0e-27 125.9 235 42.1
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.0e-27 125.9 240 42.1
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 6.8e-27 125.2 229 43.7
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 6.8e-27 125.2 237 41.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-26 124.4 239 43.1
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.2e-26 124.4 242 41.7
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.5e-26 124.0 235 42.6
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.5e-26 124.0 228 43.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.0e-26 123.6 240 43.8
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 3.4e-26 122.9 228 42.1
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.7e-26 122.1 228 43.0
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.5e-26 121.7 237 40.9
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.7e-25 120.6 235 40.9
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 2.2e-25 120.2 215 44.2
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.2e-25 120.2 232 40.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.8e-25 119.8 243 42.8
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.8e-25 119.8 243 42.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.1e-24 117.9 235 41.3
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.8e-24 117.1 241 41.5
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.4e-24 116.7 243 39.9
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.1e-24 116.3 229 42.4
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 7.0e-24 115.2 239 44.4
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 9.2e-24 114.8 232 42.2
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 9.2e-24 114.8 240 40.0
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-23 114.4 237 42.2
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-23 113.6 239 41.4
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.7e-23 113.2 237 41.8
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.7e-23 113.2 266 38.0
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.5e-23 112.8 224 40.6
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.5e-23 112.5 237 41.8
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.9e-23 112.1 244 40.6
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.0e-22 111.3 231 43.7
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.3e-22 110.2 241 41.5
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 2.3e-22 110.2 236 40.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.8e-22 109.4 196 44.4
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 5.0e-22 109.0 238 41.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 6.6e-22 108.6 226 37.6
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 8.6e-22 108.2 231 41.1
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.5e-21 106.7 237 38.4
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 7.3e-21 105.1 201 42.8
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 7.3e-21 105.1 201 42.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 7.3e-21 105.1 231 43.3
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 7.3e-21 105.1 249 37.3
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.2e-20 104.4 233 39.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.2e-20 104.4 218 39.4
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.2e-20 104.4 242 38.0
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.6e-20 104.0 276 35.9
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.1e-20 103.6 233 39.9
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.8e-20 103.2 244 39.3
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.8e-20 103.2 240 39.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.8e-20 103.2 222 38.3
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.6e-20 102.8 240 38.8
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.6e-20 102.8 240 38.8
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 4.7e-20 102.4 224 37.5
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 8.0e-20 101.7 238 36.1
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.0e-19 101.3 251 36.7
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.8e-19 100.5 197 39.6
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.3e-19 100.1 282 34.4
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.0e-19 99.8 203 40.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.2e-19 99.0 228 40.8
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 5.2e-19 99.0 198 40.4
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.4e-18 96.3 149 47.0
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.4e-18 96.3 227 36.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.7e-18 95.5 198 40.9
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 5.7e-18 95.5 142 47.2
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 7.5e-18 95.1 296 33.4
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 7.5e-18 95.1 296 33.4
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 7.5e-18 95.1 228 36.4
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 9.8e-18 94.7 226 36.3
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.7e-17 94.0 142 46.5
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.7e-17 94.0 142 46.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 3.7e-17 92.8 142 47.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 6.4e-17 92.0 296 33.8
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 6.4e-17 92.0 144 45.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 8.3e-17 91.7 142 46.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 8.3e-17 91.7 260 35.4
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.0e-16 88.6 226 35.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.0e-15 87.0 137 47.4
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.0e-15 87.0 142 46.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.7e-15 86.7 192 38.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.5e-15 86.3 169 42.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 4.6e-15 85.9 155 41.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 4.6e-15 85.9 196 38.8
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 7.8e-15 85.1 64 73.4
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 7.8e-15 85.1 168 41.1
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-14 84.3 144 43.8
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.3e-14 83.6 233 35.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 3.0e-14 83.2 140 39.3
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 6.6e-14 82.0 159 41.5
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 8.6e-14 81.6 140 43.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.5e-13 80.9 145 42.8
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.1e-12 77.0 148 42.6
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 4.7e-12 75.9 200 38.5
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.1e-11 73.2 106 48.1
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 7.5e-10 68.6 238 32.8
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.9e-08 63.9 105 43.8
BcaC04g21094 Brassica carinata HOM05D000749 ORTHO05D032201 2.4e-08 63.5 70 57.1
C09p35740 Brassica napus HOM05D000749 ORTHO05D032201 2.4e-08 63.5 70 57.1
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 1.2e-07 61.2 220 31.4
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.9e-06 56.2 98 45.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 5.0e-06 55.8 127 38.6


User provided reference genes

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