Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2624.0 1335 100.0
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2511.5 1335 96.4
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 2511.5 1335 96.4
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2482.6 1335 95.4
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2353.6 1337 90.3
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 2126.3 1329 81.9
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 2095.1 1332 81.0
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 2091.2 1330 81.1
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 2088.9 1310 82.0
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 1994.2 1336 77.6
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1938.7 1313 75.7
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1638.2 1310 65.0
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1269.2 1287 53.5
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1211.4 1324 49.2
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1198.7 1323 49.0
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1189.5 1280 48.8
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1177.9 1288 49.6
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1173.7 1317 48.5
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1171.8 1285 49.1
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1167.1 1289 48.9
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1166.0 1316 48.1
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1165.6 1294 48.1
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1165.2 1297 48.0
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1162.1 1311 47.9
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1156.4 1283 48.9
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1156.0 1282 47.7
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1152.5 1296 49.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1140.6 1282 47.2
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1137.9 1299 48.1
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1135.2 1321 47.4
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1131.3 1282 47.0
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1130.5 1429 44.6
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1127.1 1293 46.8
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1120.5 1287 46.9
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1117.1 1308 47.6
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1111.7 1282 46.5
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1098.6 1161 50.4
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1092.4 1292 46.5
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1092.4 1291 45.4
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1090.5 1281 47.2
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1087.8 1283 46.8
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1082.4 1307 45.0
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1079.7 1287 46.2
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1078.2 1286 46.1
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 6.4e-311 1071.2 1260 45.7
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.5e-309 1066.6 1255 45.7
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.7e-308 1063.1 682 79.6
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 1.0e-305 1053.9 1289 45.5
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 2.7e-298 1029.2 1284 44.5
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 2.3e-297 1026.2 1288 45.1
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 2.2e-295 1019.6 1141 47.4
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 4.1e-294 1015.4 1290 44.7
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 2.0e-293 1013.1 1282 44.1
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.6e-293 1012.7 1306 44.1
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 5.0e-292 1008.4 1337 43.5
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 6.5e-292 1008.1 1285 43.6
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.1e-291 1007.3 1151 47.6
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 1.4e-291 1006.9 1320 43.6
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 1.8e-289 1000.0 1297 44.3
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 3.0e-289 999.2 1300 42.3
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 3.0e-289 999.2 1281 44.2
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 2.0e-288 996.5 1303 44.4
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 2.6e-288 996.1 1154 47.1
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 1.4e-286 990.3 1294 42.4
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.9e-284 982.6 656 77.7
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 1.3e-279 967.2 1226 43.9
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 2.8e-279 966.1 1129 45.4
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 3.5e-277 959.1 1334 40.8
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 2.9e-276 956.1 1035 48.7
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 5.7e-272 941.8 1299 42.1
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 1.4e-270 937.2 1312 41.8
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 3.5e-269 932.6 1298 41.4
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 2.9e-268 929.5 1059 46.9
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 6.5e-268 928.3 1140 44.9
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.6e-266 923.7 1185 44.6
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 8.8e-265 917.9 1320 40.8
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 2.2e-263 913.3 1295 41.5
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 2.7e-261 906.4 1216 43.0
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.3e-260 904.0 1295 41.5
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 2.8e-258 896.3 1251 42.1
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 3.6e-258 896.0 923 50.9
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 4.7e-258 895.6 1156 44.5
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.0e-256 890.2 1266 41.0
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 5.4e-254 882.1 1271 39.9
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 4.6e-245 852.4 1301 39.7
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.0e-228 798.1 1123 40.2
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.6e-226 789.6 1022 43.3
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.7e-223 780.8 1033 42.8
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 1.3e-218 764.6 868 47.5
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 6.9e-209 732.3 1190 37.3
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 2.1e-202 710.7 1166 37.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.1e-187 661.8 798 43.4
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.5e-187 661.4 840 42.6
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 2.2e-186 657.5 1340 33.4
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 3.9e-180 636.7 754 45.8
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 5.7e-171 606.3 968 36.6
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 2.2e-167 594.3 1037 36.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 5.0e-151 540.0 735 42.7
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.1e-142 512.3 580 47.9
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 7.8e-136 489.6 462 55.0
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 1.0e-132 479.2 646 42.7
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 8.3e-130 469.5 485 52.0
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 1.3e-119 435.6 396 58.8
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.7e-111 408.7 714 37.4
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.1e-108 399.4 479 47.8
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.0e-99 368.6 481 43.5
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 1.2e-91 342.8 1265 24.9
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 5.5e-89 334.0 1351 23.8
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 1.8e-84 318.9 160 99.4
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.8e-68 265.8 356 39.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 6.9e-68 263.8 604 32.1
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 7.7e-67 260.4 390 36.4
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 2.0e-59 235.7 396 34.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.0e-55 223.4 377 37.4
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.0e-47 195.3 112 90.2
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.9e-42 178.7 289 34.9
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 9.4e-41 173.7 177 49.7
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.9e-33 149.4 158 49.4
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 7.2e-33 147.5 191 45.0
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.7e-29 135.2 327 31.8
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.6e-27 129.8 139 47.5
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 3.8e-26 125.2 136 47.8
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.8e-20 106.3 115 51.3
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.7e-18 99.8 215 26.5
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 2.8e-16 92.4 216 29.6
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 8.3e-13 80.9 130 37.7
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 5.4e-12 78.2 112 38.4
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 1.6e-11 76.6 74 47.3
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.5e-09 70.1 115 36.5
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.2e-08 67.0 58 55.2
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 3.6e-08 65.5 69 58.0
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 8.1e-08 64.3 295 21.4


User provided reference genes

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