Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 7.3e-46 186.8 91 100.0
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 7.3e-46 186.8 91 100.0
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 8.1e-45 183.3 91 97.8
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 8.1e-45 183.3 91 97.8
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.4e-44 182.6 91 97.8
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 3.4e-43 177.9 91 95.6
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.7e-42 175.6 90 91.1
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 2.9e-42 174.9 90 92.2
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 2.9e-42 174.9 90 92.2
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 2.9e-42 174.9 90 92.2
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 2.9e-42 174.9 90 92.2
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 2.9e-42 174.9 90 92.2
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 2.9e-42 174.9 90 90.0
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.9e-41 172.2 90 90.0
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 4.6e-40 167.5 90 85.6
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 7.9e-40 166.8 88 88.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 1.8e-39 165.6 90 85.6
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 5.1e-39 164.1 86 86.0
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 8.7e-39 163.3 90 86.7
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.1e-38 162.9 90 86.7
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 1.1e-36 156.4 90 83.3
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 4.0e-36 154.5 91 83.5
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 4.0e-36 154.5 90 82.2
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 4.0e-36 154.5 90 81.1
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 4.0e-36 154.5 90 81.1
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 5.3e-36 154.1 90 80.0
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 5.8e-35 150.6 90 80.0
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 7.6e-35 150.2 90 80.0
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 7.6e-35 150.2 92 77.2
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 9.9e-35 149.8 90 77.8
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 9.9e-35 149.8 89 80.9
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 9.9e-35 149.8 88 79.5
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.7e-34 149.1 89 78.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.7e-34 149.1 89 78.7
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.7e-34 149.1 90 78.9
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.7e-34 149.1 90 76.7
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.7e-34 149.1 90 76.7
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 1.7e-34 149.1 89 78.7
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 2.9e-34 148.3 90 78.9
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.9e-34 148.3 89 78.7
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.9e-34 148.3 90 78.9
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 3.8e-34 147.9 88 79.5
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 3.8e-34 147.9 88 77.3
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.8e-34 147.9 88 77.3
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 3.8e-34 147.9 89 77.5
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 4.9e-34 147.5 89 77.5
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 4.9e-34 147.5 90 77.8
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.9e-34 147.5 89 78.7
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 4.9e-34 147.5 90 76.7
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.9e-34 147.5 90 78.9
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.4e-34 147.1 90 77.8
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.4e-34 147.1 90 77.8
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 6.4e-34 147.1 90 77.8
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 6.4e-34 147.1 89 78.7
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 1.1e-33 146.4 89 76.4
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-33 146.4 88 76.1
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.1e-33 146.4 90 77.8
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.1e-33 146.4 89 77.5
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.4e-33 146.0 89 76.4
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.4e-33 146.0 90 77.8
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.4e-33 146.0 89 76.4
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.9e-33 145.6 89 76.4
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.9e-33 145.6 89 77.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.9e-33 145.6 88 75.0
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 1.9e-33 145.6 89 77.5
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.9e-33 145.6 89 77.5
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.9e-33 145.6 90 75.6
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 2.4e-33 145.2 89 77.5
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.4e-33 145.2 89 77.5
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 3.2e-33 144.8 90 75.6
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.2e-33 144.8 89 77.5
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 4.2e-33 144.4 90 75.6
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.2e-33 144.4 88 75.0
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 4.2e-33 144.4 89 76.4
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 5.5e-33 144.1 86 76.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 5.5e-33 144.1 89 77.5
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 5.5e-33 144.1 89 77.5
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 5.5e-33 144.1 82 80.5
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 5.5e-33 144.1 90 76.7
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 5.5e-33 144.1 88 78.4
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 5.5e-33 144.1 89 77.5
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 7.1e-33 143.7 89 76.4
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 9.3e-33 143.3 85 77.6
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 9.3e-33 143.3 89 76.4
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 9.3e-33 143.3 90 74.4
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.2e-32 142.9 83 78.3
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.2e-32 142.9 89 75.3
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.2e-32 142.9 89 76.4
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 1.2e-32 142.9 88 76.1
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.6e-32 142.5 89 75.3
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.6e-32 142.5 95 73.7
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 89 75.3
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.1e-32 142.1 90 74.4
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.7e-32 141.7 85 76.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.7e-32 141.7 81 79.0
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 2.7e-32 141.7 89 75.3
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 3.5e-32 141.4 90 73.3
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 4.6e-32 141.0 91 70.3
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 4.6e-32 141.0 89 75.3
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 4.6e-32 141.0 90 74.4
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 4.6e-32 141.0 91 72.5
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 4.6e-32 141.0 91 72.5
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 6.0e-32 140.6 81 77.8
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 6.0e-32 140.6 89 74.2
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 7.9e-32 140.2 89 75.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 7.9e-32 140.2 89 75.3
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.9e-32 140.2 87 71.3
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.9e-32 140.2 87 71.3
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.0e-31 139.8 89 74.2
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.3e-31 139.4 89 70.8
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.3e-31 139.4 78 82.1
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.3e-31 138.7 87 71.3
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 3.0e-31 138.3 90 73.3
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.1e-30 136.3 82 75.6
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.9e-30 135.6 89 71.9
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 4.3e-30 134.4 91 67.0
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 9.6e-30 133.3 85 71.8
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 9.6e-30 133.3 89 70.8
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.1e-29 132.1 78 75.6
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.1e-29 132.1 85 69.4
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 2.8e-29 131.7 85 71.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 6.2e-29 130.6 82 73.2
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 6.2e-29 130.6 90 68.9
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.4e-28 129.4 96 64.6
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 5.3e-28 127.5 88 68.2
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.2e-27 126.3 73 76.7
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.4e-27 124.8 91 63.7
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.3e-26 122.9 115 54.8
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.8e-26 121.3 89 67.4
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 8.4e-26 120.2 89 61.8
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 1.1e-25 119.8 70 80.0
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.4e-25 119.4 71 76.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.2e-25 118.2 71 76.1
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 4.2e-25 117.9 70 77.1
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.2e-25 117.9 71 76.1
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.2e-25 117.9 71 74.6
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 5.5e-25 117.5 70 75.7
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.5e-25 117.5 70 75.7
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 5.5e-25 117.5 70 75.7
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 7.1e-25 117.1 70 75.7
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-22 109.8 104 53.8
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.3e-22 108.2 71 70.4
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.3e-21 106.3 71 70.4
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 3.7e-21 104.8 68 67.6
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.4e-20 102.8 71 67.6
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 4.1e-20 101.3 81 64.2
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.5e-19 99.4 92 55.4
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.6e-19 98.6 61 72.1
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 2.6e-19 98.6 71 64.8
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.7e-18 95.9 90 51.1
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.1e-17 93.2 84 52.4
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 4.2e-17 91.3 48 89.6
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 7.2e-17 90.5 93 57.0
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-14 82.4 51 70.6
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-14 82.4 51 70.6
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-14 82.4 51 70.6
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-14 82.4 51 70.6
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.3e-14 81.3 94 46.8
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.7e-14 80.9 49 73.5
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.4e-12 76.3 49 73.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.3e-12 74.3 47 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 6.9e-12 73.9 63 50.8
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.6e-11 72.0 49 65.3
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 2.9e-10 68.6 56 55.4
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 4.2e-09 64.7 53 56.6
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 6.1e-08 60.8 40 70.0


User provided reference genes

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