Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p28140 Brassica napus HOM05D002114 ORTHO05D002155 1.4e-63 246.1 125 100.0
A03p28160 Brassica napus HOM05D002114 ORTHO05D002155 4.5e-62 241.1 122 99.2
BraA03t12024Z Brassica rapa HOM05D002114 ORTHO05D002155 4.5e-62 241.1 122 99.2
A03p28080 Brassica napus HOM05D002114 ORTHO05D002155 8.0e-59 230.3 122 94.3
BcaC01g04761 Brassica carinata HOM05D002114 ORTHO05D002155 3.2e-52 208.4 124 89.5
BcaC01g04763 Brassica carinata HOM05D002114 ORTHO05D002155 3.2e-52 208.4 124 89.5
BolC3t15717H Brassica oleracea HOM05D002114 ORTHO05D002155 3.2e-52 208.4 124 89.5
C03p34070 Brassica napus HOM05D002114 ORTHO05D002155 4.7e-43 177.9 124 79.0
BolC3t15714H Brassica oleracea HOM05D002114 ORTHO05D002155 1.2e-41 173.3 107 87.9
AL6G42320 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 9.2e-31 137.1 127 68.5
BcaC01g04764 Brassica carinata HOM05D002114 ORTHO05D002155 3.5e-30 135.2 124 66.1
C03p34010 Brassica napus HOM05D002114 ORTHO05D002155 3.5e-30 135.2 124 66.1
BcaC01g04770 Brassica carinata HOM05D002114 ORTHO05D002155 2.9e-29 132.1 124 64.5
C03p33950 Brassica napus HOM05D002114 ORTHO05D002155 2.9e-29 132.1 124 64.5
C03p33970 Brassica napus HOM05D002114 ORTHO05D002155 2.9e-29 132.1 124 64.5
C03p33990 Brassica napus HOM05D002114 ORTHO05D002155 2.9e-29 132.1 124 64.5
A03p28100 Brassica napus HOM05D002114 ORTHO05D002155 1.1e-28 130.2 131 60.3
Carub.0006s2705 Capsella rubella HOM05D002114 ORTHO05D002155 2.5e-28 129.0 126 62.7
Sp6g09350 Schrenkiella parvula HOM05D002114 ORTHO05D002155 1.6e-27 126.3 126 63.5
BolC3t15712H Brassica oleracea HOM05D002114 ORTHO05D002155 1.8e-26 122.9 124 62.9
Thhalv10028540m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 8.9e-26 120.6 123 61.0
Thhalv10003900m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 1.5e-25 119.8 126 60.3
BcaB01g02858 Brassica carinata HOM05D002114 ORTHO05D002155 1.3e-24 116.7 121 60.3
BcaB01g02859 Brassica carinata HOM05D002114 ORTHO05D002155 1.3e-24 116.7 121 60.3
Sp1g31190 Schrenkiella parvula HOM05D002114 ORTHO05D002155 1.7e-24 116.3 126 60.3
BcaB07g33990 Brassica carinata HOM05D002114 ORTHO05D002155 7.0e-23 110.9 126 57.1
BcaC01g04769 Brassica carinata HOM05D002114 ORTHO05D002155 1.2e-22 110.2 119 58.0
BcaB07g33077 Brassica carinata HOM05D002114 ORTHO05D002155 6.0e-22 107.8 125 55.2
BcaC01g04768 Brassica carinata HOM05D002114 ORTHO05D002155 7.8e-22 107.5 123 56.9
BcaB01g02856 Brassica carinata HOM05D002114 ORTHO05D002155 3.0e-21 105.5 121 60.3
BcaC01g04767 Brassica carinata HOM05D002114 ORTHO05D002155 3.9e-21 105.1 119 57.1
Aa31LG6G9080 Aethionema arabicum HOM05D002114 ORTHO05D002155 1.9e-20 102.8 126 55.6
CARHR259540 Cardamine hirsuta HOM05D002114 ORTHO05D002155 4.3e-20 101.7 125 56.8
AT4G08510 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 7.3e-20 100.9 125 55.2
THA.LOC104813131 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 9.5e-20 100.5 126 54.0
BolC3t15709H Brassica oleracea HOM05D002114 ORTHO05D002155 3.6e-19 98.6 107 59.8
THA.LOC104806809 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 1.4e-18 96.7 124 54.8
AL1G51130 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 2.3e-18 95.9 126 53.2
CARHR034770 Cardamine hirsuta HOM05D002114 ORTHO05D002155 2.3e-18 95.9 126 52.4
AT1G36990 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 5.2e-18 94.7 126 53.2
BcaC08g43755 Brassica carinata HOM05D002114 ORTHO05D002155 7.5e-17 90.9 126 51.6
C06p11320 Brassica napus HOM05D002114 ORTHO05D002155 7.5e-17 90.9 126 51.6
BolC6t36266H Brassica oleracea HOM05D002114 ORTHO05D002155 7.5e-17 90.9 126 51.6
Sabra05G0129600 Salix brachista HOM05D002114 ORTHO05D002155 1.3e-16 90.1 131 49.6
CAN.G935.3 Capsicum annuum HOM05D002114 ORTHO05D002155 1.7e-16 89.7 126 50.8
Manes.18G072900 Manihot esculenta HOM05D002114 ORTHO05D002155 3.7e-16 88.6 127 50.4
Potri.005G172100 Populus trichocarpa HOM05D002114 ORTHO05D002155 4.9e-16 88.2 131 48.9
CANSAT25G3390 Cannabis sativa HOM05D002114 ORTHO05D002155 6.4e-16 87.8 124 42.7
Potri.002G089100 Populus trichocarpa HOM05D002114 ORTHO05D002155 8.3e-16 87.4 126 50.8
THA.LOC104817001 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 8.3e-16 87.4 126 50.0
Lj1g0012616 Lotus japonicus HOM05D002114 ORTHO05D002155 1.1e-15 87.0 126 47.6
Nitab4.5_0002332g0040 Nicotiana tabacum HOM05D002114 ORTHO05D002155 1.4e-15 86.7 124 46.0
QL12p035256 Quercus lobata HOM05D002114 ORTHO05D002155 2.4e-15 85.9 125 51.2
RcHm_v2.0_Chr7g0240931 Rosa chinensis HOM05D002114 ORTHO05D002155 2.4e-15 85.9 122 50.0
PGSC0003DMG400030206 Solanum tuberosum HOM05D002114 ORTHO05D002155 2.4e-15 85.9 126 49.2
Sabra02G0070100 Salix brachista HOM05D002114 ORTHO05D002155 3.2e-15 85.5 126 50.0
Cpa.g.sc49.129 Carica papaya HOM05D002114 ORTHO05D002155 4.1e-15 85.1 126 49.2
Nitab4.5_0000051g0060 Nicotiana tabacum HOM05D002114 ORTHO05D002155 4.1e-15 85.1 124 45.2
Ciclev10000635m.g Citrus clementina HOM05D002114 ORTHO05D002155 5.4e-15 84.7 126 46.8
Duzib093G1968 Durio zibethinus HOM05D002114 ORTHO05D002155 5.4e-15 84.7 126 50.8
CiPaw.05G228500 Carya illinoinensis HOM05D002114 ORTHO05D002155 7.0e-15 84.3 121 47.9
Manes.02G158800 Manihot esculenta HOM05D002114 ORTHO05D002155 9.2e-15 84.0 127 48.0
Atru.chr13.1319 Acer truncatum HOM05D002114 ORTHO05D002155 1.6e-14 83.2 122 41.8
Atru.chr13.1363 Acer truncatum HOM05D002114 ORTHO05D002155 1.6e-14 83.2 122 41.8
Hma1.2p1_0221F.1_g093190 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 1.6e-14 83.2 123 43.9
TWI56G1477 Tripterygium wilfordii HOM05D002114 ORTHO05D002155 1.6e-14 83.2 121 43.8
Gohir.A02G074900 Gossypium hirsutum HOM05D002114 ORTHO05D002155 2.1e-14 82.8 136 47.1
MD15G1358400 Malus domestica HOM05D002114 ORTHO05D002155 2.1e-14 82.8 124 49.2
Solyc11g013760.2 Solanum lycopersicum HOM05D002114 ORTHO05D002155 3.5e-14 82.0 123 44.7
Duzib116G0235 Durio zibethinus HOM05D002114 ORTHO05D002155 7.8e-14 80.9 124 47.6
Sed0020454 Sechium edule HOM05D002114 ORTHO05D002155 1.0e-13 80.5 132 41.7
Glyma.06G108800 Glycine max HOM05D002114 ORTHO05D002155 1.3e-13 80.1 122 50.0
MELO3C022782.2 Cucumis melo HOM05D002114 ORTHO05D002155 2.3e-13 79.3 127 45.7
MD08G1173100 Malus domestica HOM05D002114 ORTHO05D002155 3.0e-13 79.0 124 46.8
Thecc.08G117100 Theobroma cacao HOM05D002114 ORTHO05D002155 3.0e-13 79.0 126 47.6
CsaV3_5G023480 Cucumis sativus L. HOM05D002114 ORTHO05D002155 3.9e-13 78.6 127 47.2
TWI36G1025 Tripterygium wilfordii HOM05D002114 ORTHO05D002155 5.1e-13 78.2 122 43.4
ClCG03G009150 Citrullus lanatus HOM05D002114 ORTHO05D002155 6.6e-13 77.8 124 41.9
Prupe.1G505900 Prunus persica HOM05D002114 ORTHO05D002155 8.6e-13 77.4 125 47.2
Peaxi162Scf00476g00627 Petunia axillaris HOM05D002114 ORTHO05D002155 1.1e-12 77.0 125 47.2
Sopen11g008720 Solanum pennellii HOM05D002114 ORTHO05D002155 1.5e-12 76.6 123 43.1
Gohir.D02G082000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 2.5e-12 75.9 136 45.6
Gorai.005G091900 Gossypium raimondii HOM05D002114 ORTHO05D002155 2.5e-12 75.9 136 45.6
MSTRG.1485 Avicennia marina HOM05D002114 ORTHO05D002155 4.3e-12 75.1 121 41.3
Glyma.13G084300 Glycine max HOM05D002114 ORTHO05D002155 5.6e-12 74.7 124 46.0
Lj1g0019044 Lotus japonicus HOM05D002114 ORTHO05D002155 7.3e-12 74.3 127 40.9
SalBow7G2503 Salvia bowleyana HOM05D002114 ORTHO05D002155 7.3e-12 74.3 121 38.8
VMungo0647G0374 Vigna mungo HOM05D002114 ORTHO05D002155 7.3e-12 74.3 126 42.9
Phvul.008G168200 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 1.2e-11 73.6 124 39.5
arahy.Tifrunner.gnm1.ann1.6TI2WT Arachis hypogaea HOM05D002114 ORTHO05D002155 1.6e-11 73.2 124 47.6
arahy.Tifrunner.gnm1.ann1.KNS6CZ Arachis hypogaea HOM05D002114 ORTHO05D002155 1.6e-11 73.2 124 47.6
Cc00_g07850 Coffea canephora HOM05D002114 ORTHO05D002155 1.6e-11 73.2 130 39.2
Glyma.14G166100 Glycine max HOM05D002114 ORTHO05D002155 4.7e-11 71.6 123 43.9
Sed0018069 Sechium edule HOM05D002114 ORTHO05D002155 4.7e-11 71.6 128 45.3
SGA_v2.0_scaffold24G10503 Striga asiatica HOM05D002114 ORTHO05D002155 4.7e-11 71.6 123 39.8
arahy.Tifrunner.gnm1.ann1.506V44 Arachis hypogaea HOM05D002114 ORTHO05D002155 1.1e-10 70.5 119 45.4
Ca_26445_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 1.4e-10 70.1 128 43.0
Dinv26715 Davidia involucrata HOM05D002114 ORTHO05D002155 1.4e-10 70.1 124 40.3
TPR.G30411 Trifolium pratense HOM05D002114 ORTHO05D002155 1.4e-10 70.1 125 43.2
Medtr3g073280 Medicago truncatula HOM05D002114 ORTHO05D002155 1.8e-10 69.7 124 44.4
Ca_25760_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 2.3e-10 69.3 130 40.8
Psat0s411g0160 Pisum sativum HOM05D002114 ORTHO05D002155 2.3e-10 69.3 129 43.4
arahy.Tifrunner.gnm1.ann1.J4263J Arachis hypogaea HOM05D002114 ORTHO05D002155 1.2e-09 67.0 116 39.7
Gohir.D06G042000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.2e-09 67.0 111 45.0
Gorai.010G047200 Gossypium raimondii HOM05D002114 ORTHO05D002155 1.2e-09 67.0 111 45.0
Psat5g135520 Pisum sativum HOM05D002114 ORTHO05D002155 1.2e-09 67.0 126 40.5
VMungo0647G0978 Vigna mungo HOM05D002114 ORTHO05D002155 1.2e-09 67.0 127 41.7
CSS0028412 Camellia sinensis var. sinensis HOM05D002114 ORTHO05D002155 1.5e-09 66.6 126 42.9
Medtr5g060420 Medicago truncatula HOM05D002114 ORTHO05D002155 2.0e-09 66.2 122 44.3
Gohir.D05G270000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 2.6e-09 65.9 126 45.2
Gorai.009G282700 Gossypium raimondii HOM05D002114 ORTHO05D002155 2.6e-09 65.9 126 45.2
Glyma.04G253600 Glycine max HOM05D002114 ORTHO05D002155 4.4e-09 65.1 119 45.4
Gohir.A06G041100 Gossypium hirsutum HOM05D002114 ORTHO05D002155 4.4e-09 65.1 111 44.1
Phvul.008G168300 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 4.4e-09 65.1 121 44.6
Actinidia03497 Actinidia chinensis HOM05D002114 ORTHO05D002155 5.8e-09 64.7 126 37.3
Gohir.A05G268400 Gossypium hirsutum HOM05D002114 ORTHO05D002155 5.8e-09 64.7 126 44.4
Lalb_Chr10g0102001 Lupinus albus HOM05D002114 ORTHO05D002155 7.5e-09 64.3 100 45.0
SGA_v2.0_scaffold28G12028 Striga asiatica HOM05D002114 ORTHO05D002155 9.9e-09 63.9 121 36.4
DCAR_014283 Daucus carota HOM05D002114 ORTHO05D002155 1.3e-08 63.5 124 41.1
Lalb_Chr17g0343991 Lupinus albus HOM05D002114 ORTHO05D002155 1.3e-08 63.5 99 44.4
Lalb_Chr17g0344021 Lupinus albus HOM05D002114 ORTHO05D002155 2.9e-08 62.4 100 47.0
Sed0025403 Sechium edule HOM05D002114 ORTHO05D002155 2.9e-08 62.4 130 37.7
BolC3t15710H Brassica oleracea HOM05D002114 ORTHO05D002155 3.7e-08 62.0 35 85.7
Duzib041G0185 Durio zibethinus HOM05D002114 ORTHO05D002155 4.9e-08 61.6 123 39.0
Lalb_Chr17g0344001 Lupinus albus HOM05D002114 ORTHO05D002155 4.9e-08 61.6 99 43.4
CiPaw.06G025100 Carya illinoinensis HOM05D002114 ORTHO05D002155 8.3e-08 60.8 124 41.1
Lalb_Chr04g0253291 Lupinus albus HOM05D002114 ORTHO05D002155 1.1e-07 60.5 98 41.8
Actinidia29430 Actinidia chinensis HOM05D002114 ORTHO05D002155 1.4e-07 60.1 123 33.3
Cfa015960 Carpinus fangiana HOM05D002114 ORTHO05D002155 1.4e-07 60.1 124 40.3
Haze_00522 Corylus avellana HOM05D002114 ORTHO05D002155 1.9e-07 59.7 125 40.8
AUR62004696 Chenopodium quinoa HOM05D002114 ORTHO05D002155 2.4e-07 59.3 129 43.4
SHI28631 Sapria himalayana HOM05D002114 ORTHO05D000002 2.4e-07 59.3 110 40.0
AUR62023612 Chenopodium quinoa HOM05D002114 ORTHO05D002155 3.2e-07 58.9 129 42.6
SHI33964 Sapria himalayana HOM05D002114 ORTHO05D002155 5.4e-07 58.2 118 39.0
Sc23g0001300 Simmondsia chinensis HOM05D002114 ORTHO05D002155 5.4e-07 58.2 125 35.2
Migut.C01189 Erythranthe guttata HOM05D002114 ORTHO05D002155 7.1e-07 57.8 126 34.1
Hma1.2p1_0704F.1_g206810 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 7.1e-07 57.8 127 38.6


User provided reference genes

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