Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 6.4e-39 163.7 87 100.0
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 6.4e-39 163.7 87 100.0
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 2.7e-37 158.3 87 96.6
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 2.7e-37 158.3 87 96.6
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 2.7e-37 158.3 87 96.6
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 7.3e-35 150.2 87 92.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 6.4e-31 137.1 87 86.2
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 3.2e-30 134.8 72 81.9
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.2e-26 122.9 65 83.1
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.8e-26 121.7 65 81.5
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 8.1e-26 120.2 70 80.0
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.1e-25 119.8 64 79.7
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.1e-25 118.2 70 77.1
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 5.2e-25 117.5 71 74.6
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.9e-22 109.0 67 71.6
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 1.7e-20 102.4 91 57.1
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 8.6e-20 100.1 72 62.5
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.5e-19 99.4 65 66.2
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 3.3e-19 98.2 87 65.5
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 4.3e-19 97.8 87 67.8
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 7.3e-19 97.1 78 57.7
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 9.5e-19 96.7 88 68.2
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 1.2e-18 96.3 89 64.0
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 2.1e-18 95.5 83 55.4
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.1e-18 95.5 65 60.0
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 4.0e-17 91.3 74 60.8
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 4.0e-17 91.3 82 53.7
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 2.0e-16 89.0 89 49.4
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 2.6e-16 88.6 88 62.5
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 4.4e-16 87.8 90 64.4
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 4.4e-16 87.8 71 54.9
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 1.3e-15 86.3 70 55.7
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 3.8e-15 84.7 72 59.7
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 6.4e-15 84.0 85 48.2
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 8.4e-15 83.6 71 56.3
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 8.4e-15 83.6 71 56.3
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 8.4e-15 83.6 71 56.3
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 8.4e-15 83.6 78 64.1
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.1e-14 83.2 71 47.9
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 1.4e-14 82.8 87 58.6
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.4e-14 82.8 86 57.0
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.4e-14 82.0 68 51.5
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 3.2e-14 81.6 64 60.9
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 4.2e-14 81.3 67 55.2
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 5.4e-14 80.9 52 61.5
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 7.1e-14 80.5 64 54.7
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 7.1e-14 80.5 61 55.7
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 7.1e-14 80.5 70 55.7
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.1e-13 79.0 70 57.1
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 2.1e-13 79.0 64 59.4
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 3.5e-13 78.2 50 62.0
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.0e-12 76.6 66 54.5
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.3e-12 76.3 53 56.6
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 1.7e-12 75.9 65 52.3
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 2.3e-12 75.5 74 45.9
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 2.3e-12 75.5 74 45.9
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 2.3e-12 75.5 61 49.2
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.0e-12 75.1 74 44.6
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 3.0e-12 75.1 56 58.9
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 3.0e-12 75.1 50 60.0
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 5.1e-12 74.3 73 49.3
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 1.9e-11 72.4 80 55.0
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 4.3e-11 71.2 62 54.8
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 7.3e-11 70.5 87 58.6
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 9.6e-11 70.1 47 61.7
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 9.6e-11 70.1 47 61.7
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 9.6e-11 70.1 47 61.7
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.3e-10 69.7 56 50.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 2.1e-10 68.9 71 49.3
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.8e-10 68.6 70 52.9
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 4.8e-10 67.8 61 52.5
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 4.8e-10 67.8 91 42.9
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 1.1e-09 66.6 82 42.7
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.8e-09 65.9 54 48.1
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 6.9e-09 63.9 50 50.0
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 6.9e-09 63.9 87 46.0
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 6.9e-09 63.9 87 46.0
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.2e-08 63.2 47 55.3
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.0e-08 62.4 60 55.0
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.6e-08 62.0 57 50.9
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 3.4e-08 61.6 61 50.8
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 2.2e-07 58.9 53 43.4
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.1e-06 56.6 60 45.0
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.1e-06 56.6 60 45.0
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.3e-06 53.5 67 41.8
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.3e-06 53.5 67 41.8


User provided reference genes

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