Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 3.4e-145 518.5 287 100.0
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 3.4e-145 518.5 287 100.0
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 1.2e-139 500.0 287 93.7
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 1.2e-139 500.0 287 93.7
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 6.1e-139 497.7 287 93.4
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 3.1e-135 485.3 288 90.6
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 1.2e-121 440.3 293 82.9
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 6.4e-120 434.5 294 82.7
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 1.2e-118 430.3 293 85.0
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 6.0e-118 427.9 294 81.3
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 2.3e-117 426.0 294 81.3
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 5.6e-116 421.4 293 80.2
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.4e-98 362.8 269 75.5
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 5.8e-97 358.2 292 68.5
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 6.6e-93 344.7 297 67.3
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.3e-88 330.5 294 65.3
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.7e-88 330.1 294 63.6
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 7.9e-86 321.2 297 63.0
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 7.9e-86 321.2 293 61.8
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.3e-85 320.5 301 61.5
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.5e-84 317.0 297 63.3
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 1.9e-84 316.6 299 61.2
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 2.5e-84 316.2 296 62.5
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 3.3e-84 315.8 253 69.2
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.6e-83 313.5 293 62.8
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.6e-83 313.5 231 74.0
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 2.8e-83 312.8 225 72.9
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 2.8e-83 312.8 287 61.3
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 3.7e-83 312.4 229 71.6
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 3.7e-83 312.4 296 63.2
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 6.2e-83 311.6 286 60.8
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.1e-82 310.8 294 59.5
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.4e-82 310.5 289 60.9
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.4e-82 309.7 301 60.1
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 3.1e-82 309.3 229 72.1
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.1e-82 309.3 295 62.4
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 3.1e-82 309.3 273 64.1
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 4.0e-82 308.9 229 71.2
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 5.3e-82 308.5 292 59.6
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 5.3e-82 308.5 296 62.8
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 5.3e-82 308.5 296 61.8
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 6.9e-82 308.1 230 71.3
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 6.9e-82 308.1 292 60.6
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.2e-81 307.4 291 61.9
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.2e-81 307.4 295 62.0
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.2e-81 307.4 295 62.0
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 1.2e-81 307.4 227 72.2
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.6e-81 306.2 230 70.9
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 3.4e-81 305.8 229 72.1
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 3.4e-81 305.8 294 60.9
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 4.5e-81 305.4 230 68.7
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 5.8e-81 305.1 252 65.9
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 5.8e-81 305.1 229 70.7
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 5.8e-81 305.1 296 60.1
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 5.8e-81 305.1 229 70.7
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 7.6e-81 304.7 295 61.4
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 7.6e-81 304.7 229 72.1
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 9.9e-81 304.3 291 61.2
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 9.9e-81 304.3 291 61.2
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 2.2e-80 303.1 230 70.9
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.2e-80 303.1 291 61.2
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 4.9e-80 302.0 249 65.5
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 4.9e-80 302.0 297 57.2
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 8.4e-80 301.2 226 72.6
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.4e-79 300.4 299 58.9
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 1.4e-79 300.4 230 70.4
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 1.9e-79 300.1 229 70.3
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 2.5e-79 299.7 230 70.4
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 2.5e-79 299.7 247 64.4
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 5.5e-79 298.5 233 70.8
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 5.5e-79 298.5 296 59.8
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 5.5e-79 298.5 229 70.7
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 7.1e-79 298.1 297 60.9
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.2e-78 297.4 295 60.3
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.2e-78 297.4 295 60.3
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 2.1e-78 296.6 229 70.3
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.7e-78 296.2 229 70.7
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 2.7e-78 296.2 297 58.9
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 4.6e-78 295.4 293 57.0
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 4.6e-78 295.4 230 68.7
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 4.6e-78 295.4 230 68.7
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.0e-78 295.0 230 68.7
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 6.0e-78 295.0 226 68.6
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 7.9e-78 294.7 311 58.5
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 1.0e-77 294.3 306 58.2
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.3e-77 293.9 230 68.3
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.8e-77 293.5 227 69.6
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 3.0e-77 292.7 220 71.4
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 3.9e-77 292.4 312 58.0
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 5.1e-77 292.0 219 71.2
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 6.7e-77 291.6 229 68.6
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 8.7e-77 291.2 312 58.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 8.7e-77 291.2 276 59.1
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.1e-76 290.8 292 57.5
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 1.9e-76 290.0 339 53.4
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 2.5e-76 289.7 226 69.0
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 3.3e-76 289.3 293 58.0
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 1.6e-75 287.0 286 60.1
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 4.8e-75 285.4 218 69.7
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 8.2e-75 284.6 297 56.9
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 1.1e-74 284.3 215 71.2
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.1e-74 284.3 232 65.5
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.4e-74 283.1 280 57.5
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 5.3e-74 282.0 232 65.1
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.2e-73 280.8 230 67.0
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 1.5e-73 280.4 287 54.7
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 5.8e-73 278.5 276 59.4
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.7e-72 276.9 226 65.0
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 2.9e-72 276.2 218 66.5
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 6.5e-72 275.0 288 55.9
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.4e-71 273.9 228 65.4
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 4.2e-71 272.3 229 64.6
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 4.2e-71 272.3 220 67.3
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 9.3e-71 271.2 230 64.8
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 1.6e-70 270.4 264 58.7
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 7.9e-70 268.1 231 61.5
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.5e-68 263.1 208 69.2
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 3.3e-68 262.7 214 65.0
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 1.3e-67 260.8 225 65.3
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 2.8e-67 259.6 208 65.9
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 4.1e-66 255.8 226 61.5
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 9.0e-66 254.6 230 60.9
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 8.5e-64 248.1 192 70.3
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 2.7e-62 243.0 205 63.4
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 8.8e-61 238.0 261 54.0
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 2.4e-58 229.9 230 56.1
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 5.3e-58 228.8 253 54.9
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 9.1e-58 228.0 201 65.7
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 8.5e-56 221.5 172 67.4
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 1.4e-55 220.7 162 72.8
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.9e-55 220.3 234 52.6
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 1.9e-55 220.3 228 53.1
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.6e-54 217.2 171 67.8
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.7e-54 216.5 229 53.7
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.6e-52 209.9 227 52.9
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 3.8e-48 196.1 181 60.8
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 2.6e-44 183.3 228 46.5
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.4e-44 182.6 142 68.3
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 3.5e-41 172.9 236 42.8
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 1.9e-39 167.2 175 57.7
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 2.2e-35 153.7 113 67.3
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.8e-34 150.6 125 65.6
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.5e-33 146.4 157 54.8
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 4.4e-28 129.4 124 60.5
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 7.5e-28 128.6 117 58.1
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 7.0e-26 122.1 87 70.1
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 7.2e-23 112.1 227 34.4
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.2e-19 100.5 149 46.3
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 1.7e-16 90.9 229 31.9
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 5.0e-16 89.4 63 71.4
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 2.3e-13 80.5 58 74.1
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.7e-11 73.2 122 44.3
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 1.3e-08 64.7 177 30.5
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.1e-07 61.6 192 26.0
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 7.3e-07 58.9 192 26.0
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 9.5e-07 58.5 182 27.5
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 2.8e-06 57.0 178 24.7
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 4.7e-06 56.2 51 62.7
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 6.2e-06 55.8 173 26.0
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 6.2e-06 55.8 185 25.9
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 6.2e-06 55.8 182 26.9
MELO3C017270.2 Cucumis melo HOM05D000764 ORTHO05D002819 8.0e-06 55.5 168 26.8
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 8.0e-06 55.5 168 26.8
TPR.G23891 Trifolium pratense HOM05D000764 ORTHO05D002819 8.0e-06 55.5 194 26.8


User provided reference genes

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