Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 7.6e-127 457.2 238 100.0
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 7.6e-127 457.2 238 100.0
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 4.2e-125 451.4 238 98.3
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 5.5e-125 451.1 238 98.3
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 3.3e-122 441.8 232 98.3
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 7.6e-111 404.1 214 98.1
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 2.5e-106 389.0 238 86.6
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 5.7e-106 387.9 236 86.0
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 2.2e-105 386.0 236 86.9
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 8.8e-99 364.0 238 82.8
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 8.8e-99 364.0 238 82.8
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 1.7e-94 349.7 233 79.8
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 9.1e-88 327.4 238 71.4
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 3.5e-87 325.5 240 72.1
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 4.5e-87 325.1 240 72.1
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.0e-86 323.9 237 72.6
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 5.0e-86 321.6 236 70.8
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 3.2e-85 318.9 239 72.8
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.6e-84 316.6 238 70.6
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 1.6e-84 316.6 230 73.0
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 6.1e-84 314.7 200 78.0
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 1.5e-82 310.1 240 70.8
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 3.7e-81 305.4 172 85.5
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 1.8e-80 303.1 230 69.6
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 1.8e-80 303.1 199 75.9
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 5.3e-80 301.6 236 67.8
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 5.3e-80 301.6 200 75.0
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 9.1e-80 300.8 250 64.4
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 4.5e-79 298.5 173 80.3
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 1.3e-78 297.0 239 66.5
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.3e-78 297.0 170 82.9
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 1.3e-78 297.0 200 75.0
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 3.8e-78 295.4 220 70.5
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 3.8e-78 295.4 172 81.4
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 5.0e-78 295.0 228 68.4
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 5.0e-78 295.0 187 75.9
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 6.5e-78 294.7 172 82.6
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 6.5e-78 294.7 186 78.5
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 8.5e-78 294.3 205 71.2
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 8.5e-78 294.3 200 72.0
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 1.1e-77 293.9 170 81.8
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 1.1e-77 293.9 212 72.2
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 1.5e-77 293.5 230 67.0
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.9e-77 293.1 200 73.0
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 3.2e-77 292.4 189 76.7
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 3.2e-77 292.4 189 76.2
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 4.2e-77 292.0 233 67.4
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 9.4e-77 290.8 170 81.2
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 1.2e-76 290.4 200 72.0
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.6e-76 290.0 175 77.7
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.6e-76 290.0 175 77.7
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 2.1e-76 289.7 179 78.2
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 2.1e-76 289.7 233 66.1
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 2.7e-76 289.3 226 67.3
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 4.7e-76 288.5 172 79.1
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 4.7e-76 288.5 250 64.4
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 6.1e-76 288.1 171 79.5
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 6.1e-76 288.1 206 70.4
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 1.0e-75 287.3 170 80.6
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 1.0e-75 287.3 170 80.6
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 1.4e-75 287.0 237 64.6
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 3.0e-75 285.8 243 63.8
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 4.0e-75 285.4 255 61.6
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 4.0e-75 285.4 190 74.2
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 4.0e-75 285.4 235 66.0
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 5.2e-75 285.0 173 76.3
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 5.2e-75 285.0 201 71.6
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 5.2e-75 285.0 185 75.7
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 6.8e-75 284.6 248 67.7
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 8.8e-75 284.3 181 76.2
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 2.0e-74 283.1 181 75.7
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.6e-74 282.7 192 73.4
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 3.4e-74 282.3 230 64.8
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 3.4e-74 282.3 212 71.2
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.7e-73 278.9 239 64.9
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 4.8e-73 278.5 220 65.5
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 1.4e-72 276.9 244 63.1
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 3.1e-72 275.8 225 64.9
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.1e-72 275.4 160 81.2
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.1e-72 275.4 160 81.2
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 1.2e-71 273.9 241 63.1
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 4.5e-71 271.9 142 94.4
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 5.9e-71 271.6 248 60.9
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 2.9e-70 269.2 234 62.4
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 2.9e-70 269.2 172 75.6
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 8.6e-70 267.7 233 60.5
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 1.2e-68 263.8 214 64.0
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 1.6e-68 263.5 199 65.8
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 8.0e-68 261.2 233 62.7
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 3.0e-67 259.2 226 62.8
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 4.0e-67 258.8 249 59.4
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 1.5e-66 256.9 238 61.3
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 6.3e-65 251.5 195 64.6
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 4.1e-64 248.8 245 59.2
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.2e-63 247.3 226 61.5
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 3.5e-63 245.7 223 59.6
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 1.3e-62 243.8 207 66.7
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 1.7e-62 243.4 173 71.1
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 3.8e-62 242.3 178 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 7.3e-61 238.0 212 55.7
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 7.3e-61 238.0 184 60.9
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 7.3e-61 238.0 184 60.9
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 7.5e-58 228.0 200 57.0
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 3.7e-57 225.7 170 65.9
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 1.6e-55 220.3 198 55.6
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 3.9e-54 215.7 136 76.5
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.2e-52 210.7 133 77.4
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 8.9e-51 204.5 226 49.6
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 1.2e-44 184.1 128 71.1
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 8.1e-44 181.4 125 73.6
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 5.8e-42 175.3 120 70.0
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 7.3e-37 158.3 106 76.4
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 6.4e-25 118.6 204 37.3
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 3.2e-24 116.3 87 66.7
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.1e-19 101.3 201 30.3
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 7.6e-18 95.1 180 35.0
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 5.6e-13 79.0 55 69.1
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 7.1e-08 62.0 152 29.6
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 3.5e-07 59.7 152 28.3


User provided reference genes

Program Settings