Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.2e-126 455.7 235 100.0
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.0e-123 446.8 235 99.1
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 8.9e-112 407.1 242 91.3
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 4.6e-108 394.8 244 87.7
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.3e-107 393.3 240 87.5
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 3.9e-107 391.7 241 87.6
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-104 382.9 239 85.8
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 5.8e-103 377.9 242 84.3
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 5.8e-103 377.9 242 84.3
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 5.8e-103 377.9 241 84.2
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.7e-102 376.3 242 83.9
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.9e-101 372.9 242 83.1
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 4.0e-96 355.1 188 97.3
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.0e-91 340.5 243 79.4
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 1.1e-90 337.0 244 77.0
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.9e-90 336.3 241 77.6
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.6e-89 332.0 239 74.9
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 5.8e-87 324.7 239 76.6
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 5.6e-82 308.1 164 97.0
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 4.6e-68 261.9 200 66.5
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.0e-67 260.8 194 68.0
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.8e-67 260.0 204 64.2
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.3e-67 259.6 195 67.7
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 5.7e-66 255.0 232 60.8
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.3e-65 253.8 234 59.8
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.2e-65 253.1 194 67.0
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 2.8e-65 252.7 226 58.8
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 6.3e-65 251.5 199 67.8
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 8.2e-65 251.1 230 59.1
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 8.2e-65 251.1 212 60.8
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.1e-64 250.8 192 67.7
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.4e-64 250.4 188 68.1
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 2.4e-64 249.6 194 66.5
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 2.4e-64 249.6 208 61.5
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.5e-63 246.9 228 59.6
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.0e-63 246.5 199 64.8
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 3.4e-63 245.7 194 65.5
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 4.5e-63 245.4 224 58.9
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 4.5e-63 245.4 192 65.6
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 4.5e-63 245.4 234 57.7
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 5.9e-63 245.0 192 67.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 1.3e-62 243.8 238 57.6
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.7e-62 243.4 187 67.9
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 2.2e-62 243.0 196 63.3
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.9e-62 242.7 195 64.6
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.9e-62 242.7 212 59.9
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.8e-62 242.3 232 58.6
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 8.5e-62 241.1 188 65.4
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.9e-61 240.0 229 58.1
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.5e-61 239.6 188 64.9
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 2.5e-61 239.6 207 60.9
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 3.2e-61 239.2 188 65.4
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 4.2e-61 238.8 206 59.7
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 4.2e-61 238.8 191 63.4
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 5.5e-61 238.4 183 66.7
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 7.2e-61 238.0 195 63.6
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 9.4e-61 237.7 212 60.8
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 9.4e-61 237.7 165 71.5
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.2e-60 237.3 219 57.5
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 1.2e-60 237.3 196 64.3
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.6e-60 236.9 235 57.0
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 3.6e-60 235.7 199 62.3
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 3.6e-60 235.7 218 56.9
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 7.9e-60 234.6 200 63.0
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.8e-59 233.4 200 61.0
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.3e-59 233.0 245 55.5
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.3e-59 233.0 224 58.5
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 2.3e-59 233.0 198 61.6
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 3.0e-59 232.6 158 70.9
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 3.9e-59 232.3 191 62.8
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 6.7e-59 231.5 204 57.8
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 6.7e-59 231.5 206 59.7
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 8.8e-59 231.1 200 60.5
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 8.8e-59 231.1 167 70.7
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 1.5e-58 230.3 206 58.3
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.5e-58 230.3 196 63.3
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.0e-58 229.9 228 56.6
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 2.5e-58 229.6 200 60.5
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 2.5e-58 229.6 193 63.2
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 2.5e-58 229.6 201 61.2
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 3.3e-58 229.2 210 60.5
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 5.7e-58 228.4 234 56.8
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.7e-58 228.4 205 60.0
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.3e-57 227.3 161 69.6
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.7e-57 226.9 227 53.7
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 8.2e-57 224.6 241 53.1
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 3.1e-56 222.6 233 53.6
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 5.3e-56 221.9 210 55.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.0e-55 219.9 158 66.5
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 2.6e-55 219.5 155 68.4
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 2.6e-55 219.5 186 60.8
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 3.8e-54 215.7 156 66.7
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.5e-54 214.9 197 58.4
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.1e-53 214.2 166 66.3
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.2e-52 210.7 194 60.3
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 2.7e-52 209.5 162 63.6
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 3.6e-52 209.1 180 60.0
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 5.3e-48 195.3 140 70.7
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.6e-47 193.7 157 60.5
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 4.5e-47 192.2 155 60.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 4.2e-45 185.7 200 52.0
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.7e-44 183.0 156 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.3e-41 174.1 155 56.1
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.8e-40 170.2 229 45.9
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.8e-40 170.2 184 50.5
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 3.1e-40 169.5 160 56.9
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 4.5e-39 165.6 156 57.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 5.7e-34 148.7 194 45.4
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.4e-32 143.3 194 43.8
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 1.6e-31 140.6 156 48.7
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.0e-30 137.9 153 47.1
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.7e-30 137.1 92 71.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.9e-29 133.7 169 43.8
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 8.8e-27 124.8 82 72.0
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 2.0e-26 123.6 168 41.1
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.8e-24 117.1 82 68.3
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 2.4e-24 116.7 90 63.3
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.0e-24 115.2 119 53.8
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.2e-23 114.4 116 53.4
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 3.5e-23 112.8 122 48.4
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 5.9e-23 112.1 118 50.8
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 5.9e-23 112.1 106 61.3
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-21 107.1 156 40.4
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 6.1e-20 102.1 69 68.1
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 4.6e-15 85.9 124 41.1
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.0e-14 84.7 193 33.7
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.0e-11 74.7 96 47.9
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-11 73.2 107 41.1
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 2.0e-10 70.5 97 43.3
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 7.0e-08 62.0 93 41.9
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 7.0e-08 62.0 146 30.1
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.6e-07 60.8 229 27.5
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 2.7e-07 60.1 146 30.1
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 2.7e-07 60.1 127 31.5
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.7e-07 60.1 219 26.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 3.5e-07 59.7 146 30.1
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 3.5e-07 59.7 246 26.0
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.5e-07 59.7 104 41.3
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 7.8e-07 58.5 245 24.5
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.3e-06 57.8 177 27.1
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-06 57.8 182 28.0
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.7e-06 57.4 182 28.0
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 3.0e-06 56.6 114 30.7
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 3.0e-06 56.6 101 32.7
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 3.0e-06 56.6 203 26.1
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 3.0e-06 56.6 122 32.0
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 3.9e-06 56.2 205 28.8
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.9e-06 56.2 179 27.4
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.0e-06 55.8 177 26.6
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 6.6e-06 55.5 121 28.1
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 6.6e-06 55.5 121 28.1
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 6.6e-06 55.5 180 27.8
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 8.6e-06 55.1 136 29.4
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 8.6e-06 55.1 172 25.6


User provided reference genes

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