Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 6.5e-210 733.8 366 100.0
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.7e-197 691.4 371 95.1
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-195 686.0 372 94.1
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.2e-193 677.9 371 93.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 5.9e-187 657.5 369 89.2
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.7e-186 656.0 369 91.1
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 2.9e-186 655.2 369 89.2
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 5.0e-186 654.4 369 88.9
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.5e-185 652.9 369 88.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.2e-182 643.3 368 88.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.0e-178 630.2 371 85.7
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.2e-177 625.2 368 86.1
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.2e-176 623.2 379 86.5
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 2.0e-174 615.9 348 88.5
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 3.8e-170 601.7 373 81.0
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 5.6e-169 597.8 369 80.8
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.8e-168 595.5 369 79.9
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-159 566.6 372 78.2
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 9.0e-127 457.6 375 64.5
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.2e-124 448.7 374 62.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 3.5e-123 445.7 375 63.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.5e-123 445.7 369 63.4
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.7e-122 441.0 375 61.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.7e-122 441.0 367 62.4
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.5e-121 440.3 378 61.4
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.5e-121 439.5 290 78.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.4e-121 438.0 376 62.0
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 9.6e-121 437.6 381 60.6
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.6e-120 435.6 380 60.8
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.6e-120 435.6 381 60.6
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 4.8e-120 435.3 374 60.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 4.8e-120 435.3 369 62.3
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 8.1e-120 434.5 375 61.6
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.1e-119 432.6 381 59.8
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 3.1e-119 432.6 374 61.2
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 4.0e-119 432.2 380 58.9
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.2e-118 430.6 381 60.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 2.6e-118 429.5 375 60.3
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.6e-118 429.5 375 59.2
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 9.9e-118 427.6 375 60.5
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.3e-117 427.2 370 60.3
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.7e-117 426.8 373 60.1
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.9e-117 426.0 372 59.7
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.9e-117 425.2 375 59.2
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.4e-117 424.9 375 58.9
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.2e-116 422.2 376 59.6
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 5.5e-116 421.8 369 58.3
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.5e-116 421.8 375 60.0
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 4.6e-115 418.7 334 65.9
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.0e-114 416.0 370 58.1
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.5e-113 413.7 373 61.1
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 1.9e-113 413.3 373 56.8
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.3e-113 412.1 376 58.5
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 7.4e-113 411.4 371 57.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 9.6e-113 411.0 374 58.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.7e-112 409.1 373 57.1
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 3.7e-112 409.1 383 57.4
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 8.1e-112 407.9 376 58.8
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.1e-111 407.5 366 57.7
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.4e-111 407.1 376 58.5
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.4e-111 406.4 369 58.3
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.4e-111 406.4 381 57.0
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.3e-111 405.2 372 57.5
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.3e-111 405.2 372 57.5
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 5.3e-111 405.2 367 58.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 5.3e-111 405.2 369 56.6
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.2e-110 404.1 374 57.0
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 5.8e-110 401.7 371 57.1
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 5.8e-110 401.7 375 56.0
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 5.8e-110 401.7 372 56.2
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 3.8e-109 399.1 375 56.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 4.9e-109 398.7 377 56.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.1e-108 397.5 371 55.8
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 2.5e-108 396.4 367 55.9
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.2e-107 394.0 365 56.4
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.1e-107 393.3 369 57.2
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 6.0e-107 391.7 370 56.5
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-106 390.6 374 54.5
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.5e-105 387.1 370 56.2
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.9e-105 386.7 377 56.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.6e-104 383.6 416 50.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 2.8e-104 382.9 367 56.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.8e-104 382.1 404 53.5
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 4.1e-103 379.0 374 53.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.4e-102 375.9 354 58.2
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 4.5e-102 375.6 354 56.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.5e-102 375.6 362 56.9
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.0e-101 374.4 347 56.8
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.3e-101 374.0 347 58.8
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.7e-101 373.6 373 53.6
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.1e-100 370.9 372 53.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.6e-99 367.1 365 54.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.1e-99 366.7 375 52.8
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 2.1e-99 366.7 350 56.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.7e-99 366.3 387 53.2
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.3e-98 364.0 372 53.0
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 2.3e-98 363.2 347 55.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.9e-98 362.5 324 57.7
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.9e-98 362.5 350 54.9
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.6e-96 357.1 375 49.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.6e-96 357.1 369 54.2
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.7e-96 355.9 334 56.9
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.2e-94 350.9 331 57.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.4e-94 349.4 372 49.2
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 4.5e-94 349.0 375 52.3
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 5.9e-94 348.6 377 48.5
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.0e-93 347.8 377 48.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.9e-93 346.3 376 51.3
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 7.9e-91 338.2 367 52.3
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 7.9e-91 338.2 380 49.7
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 2.3e-90 336.7 349 52.4
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 3.9e-90 335.9 329 57.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.1e-90 335.5 397 46.9
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 6.7e-90 335.1 331 56.5
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.0e-89 333.6 298 59.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 4.4e-89 332.4 352 51.1
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 9.7e-89 331.3 384 46.9
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 6.3e-88 328.6 384 47.4
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 8.2e-88 328.2 346 54.9
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 7.0e-79 298.5 302 54.0
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.5e-77 292.0 380 47.1
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 3.3e-73 279.6 342 46.2
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.8e-71 273.9 380 41.6
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.0e-69 268.1 477 36.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 9.4e-68 261.5 413 40.0
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.6e-67 260.8 301 49.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.0e-66 258.1 244 54.5
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.0e-66 258.1 384 39.3
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 3.7e-64 249.6 219 60.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.8e-63 247.3 387 38.2
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.1e-63 245.0 278 52.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.2e-60 236.5 292 50.0
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 7.8e-54 215.3 257 49.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 6.6e-53 212.2 336 36.9
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.1e-51 207.2 382 35.1
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.0e-50 204.9 242 49.2
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.5e-49 198.7 253 48.6
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.4e-47 193.7 224 50.4
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.4e-47 193.7 217 47.0
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 3.2e-47 193.4 266 44.4
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.8e-46 188.7 206 51.5
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 8.0e-43 178.7 158 56.3
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.0e-37 160.2 140 57.1
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-35 154.1 117 65.0
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.8e-34 149.1 148 57.4
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.4e-23 114.0 73 67.1
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-22 111.3 121 48.8
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 7.3e-20 102.4 179 36.3
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 4.4e-17 93.2 57 75.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.4e-15 88.2 291 24.7
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 3.0e-13 80.5 74 56.8
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 4.0e-10 70.1 42 73.8
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.7e-08 64.7 51 60.8
BcaC04g20550 Brassica carinata HOM05D016321 ORTHO05D090386 4.6e-06 56.6 74 47.3
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 7.9e-06 55.8 34 82.4


User provided reference genes

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