Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 4.0e-182 641.3 333 100.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 3.4e-181 638.3 333 99.4
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 9.5e-176 620.2 333 96.4
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 6.8e-174 614.0 333 96.4
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 7.8e-170 600.5 347 90.8
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.1e-160 570.1 341 87.1
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 3.6e-159 565.1 345 84.3
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 2.7e-154 548.9 330 83.6
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.7e-153 546.2 348 80.7
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.9e-153 545.0 340 83.8
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 4.7e-151 538.1 345 81.4
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-150 536.2 306 87.6
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 5.8e-149 531.2 303 86.1
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 7.6e-149 530.8 347 81.6
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 9.9e-149 530.4 345 81.7
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 6.4e-148 527.7 342 82.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-143 512.3 302 85.1
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 5.6e-136 488.0 334 74.6
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.2e-133 480.3 345 73.9
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.6e-127 459.9 302 75.2
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.5e-120 436.8 293 72.0
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 3.3e-120 435.6 343 65.3
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.3e-120 435.3 351 63.8
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 7.4e-120 434.5 295 71.2
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 9.7e-120 434.1 334 65.9
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 9.7e-120 434.1 334 65.9
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 3.7e-119 432.2 306 69.0
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 1.1e-118 430.6 330 64.5
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.4e-118 429.5 294 71.4
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 4.1e-118 428.7 294 69.4
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 9.0e-118 427.6 335 66.0
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.0e-118 427.6 294 71.4
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 9.0e-118 427.6 294 70.7
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.0e-117 426.4 294 69.7
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.6e-117 426.0 342 67.0
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.6e-117 426.0 294 70.4
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 2.6e-117 426.0 305 68.9
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.0e-116 424.1 301 68.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.0e-116 424.1 329 66.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 1.7e-116 423.3 323 65.3
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.2e-116 422.9 315 66.7
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.2e-116 422.9 295 70.5
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.9e-116 422.5 294 70.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 3.8e-116 422.2 293 70.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 2.5e-115 419.5 294 69.4
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.2e-115 417.9 294 69.7
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 7.2e-115 417.9 294 68.7
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.6e-114 416.8 334 64.4
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.1e-114 416.4 329 64.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.1e-114 416.4 296 67.6
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.1e-114 416.4 331 63.1
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 7.9e-114 414.5 333 61.9
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 7.9e-114 414.5 328 62.5
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.4e-113 413.7 296 67.9
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-113 413.7 341 62.8
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.4e-113 413.7 294 68.0
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.8e-113 413.3 294 70.1
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.8e-113 413.3 294 68.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 3.9e-113 412.1 295 66.4
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 3.9e-113 412.1 294 68.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.5e-112 409.5 294 70.1
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.5e-112 409.5 295 67.1
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 4.3e-112 408.7 302 66.6
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 5.7e-112 408.3 302 66.2
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 5.7e-112 408.3 333 63.1
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 9.7e-112 407.5 320 63.1
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.7e-111 406.8 294 67.0
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.2e-111 406.4 331 65.3
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-111 406.0 305 72.8
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.7e-111 405.6 296 65.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 3.7e-111 405.6 328 65.2
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 4.8e-111 405.2 335 62.4
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.8e-110 403.3 332 63.0
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.4e-110 402.9 288 69.1
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 5.3e-110 401.7 327 61.5
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 6.9e-110 401.4 294 67.0
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.1e-110 401.0 295 66.4
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.6e-109 399.4 296 64.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.6e-109 399.4 296 64.9
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.6e-109 399.4 333 61.6
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.3e-108 397.1 293 67.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.7e-108 396.7 294 67.3
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.5e-108 394.4 299 64.5
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-107 393.7 293 64.5
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.4e-107 393.7 293 64.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.9e-107 393.3 335 60.9
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 4.2e-107 392.1 330 60.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 9.4e-107 391.0 329 60.8
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-106 390.6 293 63.8
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 3.6e-106 389.0 334 58.4
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 6.1e-106 388.3 294 65.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.0e-105 387.5 331 61.9
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.0e-105 387.5 331 61.9
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.3e-105 386.3 302 65.2
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.8e-105 384.4 337 58.8
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.3e-104 382.5 326 59.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 3.3e-104 382.5 299 60.5
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 9.7e-104 380.9 332 59.6
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.3e-103 380.6 345 56.2
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.3e-103 380.6 294 63.3
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.5e-101 372.1 288 62.8
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.7e-101 371.3 288 62.8
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.3e-100 370.5 294 62.6
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-99 367.5 288 62.5
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 3.2e-99 365.9 269 66.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.2e-99 364.8 297 60.9
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.3e-95 354.0 328 57.0
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.5e-93 345.9 340 51.5
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 4.5e-93 345.5 266 63.2
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.3e-92 344.0 296 58.8
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.2e-92 343.2 294 60.5
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.0e-92 342.0 299 58.5
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.0e-89 332.8 292 58.2
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.8e-87 325.5 289 56.1
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 8.3e-87 324.7 337 53.7
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.7e-82 309.7 269 57.6
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.4e-81 307.4 307 52.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.0e-77 293.5 249 58.6
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.2e-72 277.7 314 47.1
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-71 274.2 199 68.3
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.2e-71 273.5 381 42.3
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.3e-68 263.5 254 57.5
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.6e-66 257.3 290 43.8
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.2e-65 252.3 201 65.2
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.2e-64 251.1 295 46.4
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.9e-63 246.5 290 43.1
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 7.8e-61 238.4 291 40.9
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 5.6e-59 232.3 284 46.1
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.2e-56 224.6 162 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.9e-54 217.2 259 42.9
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.3e-47 194.5 174 55.2
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 8.3e-47 191.8 143 74.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.9e-46 190.7 138 75.4
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.3e-44 183.7 225 47.1
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-44 183.0 125 82.4
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.5e-35 154.5 84 82.1
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 9.6e-35 151.8 282 33.0
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 5.8e-32 142.5 73 89.0
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.8e-32 142.5 87 78.2
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.2e-29 134.8 116 54.3
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.1e-29 134.0 76 81.6
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.3e-28 131.3 114 59.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 6.2e-26 122.5 102 58.8
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-25 121.7 68 80.9
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.6e-21 106.3 122 48.4
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.0e-20 105.1 120 47.5
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-20 104.4 58 86.2
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-19 100.5 92 65.2
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 3.7e-18 96.7 62 71.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.0e-17 93.2 112 44.6
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.6e-16 89.0 177 34.5
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.9e-11 74.3 47 70.2
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.6e-08 63.9 85 44.7
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.0e-07 62.0 91 36.3
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.4e-07 58.9 60 50.0


User provided reference genes

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