Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 1.5e-46 189.1 93 100.0
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 7.3e-33 143.7 74 95.9
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 3.6e-32 141.4 74 94.6
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 3.6e-32 141.4 74 94.6
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 9.8e-30 133.3 68 98.5
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 7.1e-28 127.1 63 98.4
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 2.1e-27 125.6 68 91.2
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 3.5e-27 124.8 63 96.8
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 1.3e-26 122.9 62 96.8
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.7e-26 122.5 62 96.8
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 1.7e-26 122.5 62 96.8
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.7e-26 122.5 62 96.8
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 2.3e-26 122.1 68 88.2
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 8.6e-26 120.2 62 95.2
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 7.3e-25 117.1 68 83.8
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 2.1e-24 115.5 68 83.8
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 4.7e-24 114.4 68 82.4
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 6.2e-24 114.0 68 83.8
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 1.8e-23 112.5 68 82.4
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 4.4e-22 107.8 62 80.6
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 6.6e-18 94.0 69 69.6
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 6.6e-18 94.0 69 69.6
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.1e-17 93.2 68 69.1
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 1.5e-17 92.8 74 64.9
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.5e-17 92.8 68 67.6
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 1.9e-17 92.4 69 68.1
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 3.3e-17 91.7 64 73.4
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 4.3e-17 91.3 55 81.8
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 7.3e-17 90.5 69 66.7
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.2e-16 89.7 69 69.6
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 1.2e-16 89.7 63 68.3
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 1.6e-16 89.4 68 67.6
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.6e-16 89.4 61 73.8
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 1.6e-16 89.4 56 75.0
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 2.1e-16 89.0 58 74.1
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 2.1e-16 89.0 69 65.2
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.1e-16 89.0 68 66.2
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 2.8e-16 88.6 69 68.1
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.8e-16 88.6 69 65.2
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 3.6e-16 88.2 55 80.0
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 3.6e-16 88.2 69 68.1
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 3.6e-16 88.2 57 71.9
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 3.6e-16 88.2 57 71.9
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 4.7e-16 87.8 55 78.2
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 4.7e-16 87.8 61 72.1
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 4.7e-16 87.8 69 68.1
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 6.2e-16 87.4 55 80.0
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 1.1e-15 86.7 55 74.5
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 1.1e-15 86.7 69 65.2
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 1.1e-15 86.7 55 74.5
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 1.1e-15 86.7 56 73.2
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 1.4e-15 86.3 55 74.5
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 1.4e-15 86.3 55 74.5
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 1.4e-15 86.3 69 65.2
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 1.4e-15 86.3 56 76.8
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 1.8e-15 85.9 64 70.3
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 2.4e-15 85.5 55 78.2
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 3.1e-15 85.1 69 66.7
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 4.0e-15 84.7 64 70.3
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 5.2e-15 84.3 50 82.0
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 6.8e-15 84.0 55 76.4
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 6.8e-15 84.0 55 74.5
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 6.8e-15 84.0 55 74.5
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 6.8e-15 84.0 53 79.2
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 6.8e-15 84.0 53 79.2
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 8.9e-15 83.6 58 72.4
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.2e-14 83.2 55 72.7
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 1.2e-14 83.2 55 72.7
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.2e-14 83.2 55 76.4
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.2e-14 83.2 55 76.4
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.2e-14 83.2 55 76.4
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 1.2e-14 83.2 55 74.5
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 1.2e-14 83.2 67 67.2
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 1.5e-14 82.8 46 87.0
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 1.5e-14 82.8 50 78.0
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.5e-14 82.8 69 63.8
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.5e-14 82.8 69 65.2
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 1.5e-14 82.8 69 62.3
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.5e-14 82.8 70 65.7
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 1.5e-14 82.8 67 64.2
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 2.0e-14 82.4 69 63.8
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 2.0e-14 82.4 60 70.0
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 2.6e-14 82.0 58 70.7
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 2.6e-14 82.0 50 82.0
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 2.6e-14 82.0 55 74.5
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 3.4e-14 81.6 69 63.8
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 3.4e-14 81.6 56 73.2
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 4.4e-14 81.3 69 62.3
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 5.8e-14 80.9 55 69.1
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 9.9e-14 80.1 60 66.7
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.3e-13 79.7 64 62.5
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.7e-13 79.3 49 79.6
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 1.7e-13 79.3 49 79.6
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 2.9e-13 78.6 50 74.0
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 2.9e-13 78.6 50 74.0
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 3.8e-13 78.2 69 60.9
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 4.9e-13 77.8 46 82.6
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 4.9e-13 77.8 70 60.0
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 6.4e-13 77.4 69 60.9
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.1e-12 76.6 51 72.5
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 5.4e-12 74.3 42 83.3
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 2.7e-11 72.0 50 72.0
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 2.3e-10 68.9 41 78.0
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 2.3e-10 68.9 35 91.4
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 3.9e-10 68.2 69 58.0
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 6.6e-10 67.4 55 58.2
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 3.3e-09 65.1 58 58.6
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 1.3e-08 63.2 58 62.1
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 4.0e-07 58.2 41 70.7


User provided reference genes

Program Settings