Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 2.8e-134 481.9 229 100.0
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 3.1e-133 478.4 229 99.6
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 5.8e-124 447.6 230 94.3
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 5.8e-124 447.6 230 94.3
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 3.2e-122 441.8 230 93.0
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 3.5e-76 288.9 230 66.1
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 1.4e-74 283.5 229 64.2
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 1.2e-68 263.8 163 78.5
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 1.8e-64 250.0 208 63.0
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.1e-45 187.6 235 50.2
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 5.8e-39 165.2 233 44.6
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.4e-32 144.1 226 43.8
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 7.5e-31 138.3 195 46.7
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.7e-27 127.1 224 38.8
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 2.8e-25 119.8 168 42.3
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.4e-24 117.5 160 43.1
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.2e-23 114.4 162 43.2
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.0e-23 113.6 256 35.2
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 6.4e-22 108.6 154 42.2
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-21 107.5 154 41.6
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 1.2e-20 104.4 154 40.9
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 2.3e-19 100.1 155 38.7
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 2.3e-19 100.1 146 44.5
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 3.0e-19 99.8 146 43.8
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 3.0e-19 99.8 184 37.5
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 1.9e-18 97.1 153 41.2
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 2.5e-18 96.7 155 37.4
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 2.5e-18 96.7 155 37.4
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 5.6e-18 95.5 141 44.7
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 7.3e-18 95.1 154 41.6
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 9.6e-18 94.7 146 43.2
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 1.2e-17 94.4 145 43.4
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 8.1e-17 91.7 138 44.2
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 2.4e-16 90.1 129 44.2
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 6.8e-16 88.6 166 38.6
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 1.5e-15 87.4 177 36.2
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 2.6e-15 86.7 135 43.0
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 3.4e-15 86.3 177 36.2
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 4.4e-15 85.9 150 41.3
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 1.3e-14 84.3 146 41.8
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 1.9e-13 80.5 117 41.9
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 5.4e-13 79.0 147 37.4
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 7.1e-13 78.6 117 41.9
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 2.7e-12 76.6 167 29.9
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 3.5e-12 76.3 165 30.3
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.5e-12 76.3 153 31.4
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 1.3e-11 74.3 155 29.7
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 2.3e-11 73.6 145 37.9
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 5.1e-11 72.4 102 45.1
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 5.1e-11 72.4 102 45.1
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 6.6e-11 72.0 159 32.1
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.1e-10 71.2 162 29.0
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 1.5e-10 70.9 154 29.9
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 1.5e-10 70.9 159 30.8
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 1.5e-10 70.9 152 32.9
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 1.9e-10 70.5 162 30.9
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 2.5e-10 70.1 143 35.0
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 2.5e-10 70.1 158 32.3
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 2.5e-10 70.1 182 31.3
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 3.3e-10 69.7 154 33.8
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 3.3e-10 69.7 153 30.1
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 4.3e-10 69.3 156 30.1
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 5.6e-10 68.9 137 38.0
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 5.6e-10 68.9 190 34.2
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 5.6e-10 68.9 142 31.0
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 9.6e-10 68.2 153 29.4
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 9.6e-10 68.2 149 33.6
Thhalv10001737m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 9.6e-10 68.2 97 41.2
Solyc09g083020.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 9.6e-10 68.2 153 28.8
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 1.6e-09 67.4 190 33.2
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.6e-09 67.4 175 33.1
Glyma.18G061800 Glycine max HOM05D000862 ORTHO05D000943 2.1e-09 67.0 157 35.0
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 3.6e-09 66.2 178 32.6
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.6e-09 66.2 159 28.9
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 6.2e-09 65.5 158 32.9
Glyma.11G173800 Glycine max HOM05D000862 ORTHO05D000943 8.1e-09 65.1 157 33.8
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 1.1e-08 64.7 158 33.5
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 1.1e-08 64.7 142 33.1
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.1e-08 64.7 156 29.5
Potri.005G232400 Populus trichocarpa HOM05D000862 ORTHO05D000943 1.4e-08 64.3 145 35.9
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 1.8e-08 63.9 158 32.3
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.4e-08 63.5 163 31.9
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 2.4e-08 63.5 156 30.1
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.1e-08 63.2 160 31.2
BcaB06g25745 Brassica carinata HOM05D000956 ORTHO05D001930 4.0e-08 62.8 100 41.0
A05p33060 Brassica napus HOM05D000956 ORTHO05D001930 4.0e-08 62.8 100 41.0
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 4.0e-08 62.8 168 31.0
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 5.3e-08 62.4 158 32.3
Carub.0002s0547 Capsella rubella HOM05D000209 ORTHO05D000129 5.3e-08 62.4 134 30.6
Peaxi162Scf00441g00622 Petunia axillaris HOM05D000862 ORTHO05D003588 5.3e-08 62.4 144 31.9
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.9e-08 62.0 173 30.1
Sp1g04570 Schrenkiella parvula HOM05D000862 ORTHO05D003588 6.9e-08 62.0 159 31.4
HanXRQChr12g0379721 Helianthus annuus HOM05D000862 ORTHO05D003588 9.0e-08 61.6 142 31.0
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 9.0e-08 61.6 135 31.1
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 9.0e-08 61.6 148 32.4
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 1.2e-07 61.2 140 32.9
Nn5g29733 Nelumbo nucifera HOM05D000862 ORTHO05D000943 1.2e-07 61.2 163 30.7
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 1.2e-07 61.2 154 33.8
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.5e-07 60.8 153 31.4
Lj4A33T79 Lonicera japonica HOM05D000862 ORTHO05D000943 1.5e-07 60.8 217 27.2
Psat2g057640 Pisum sativum HOM05D000862 ORTHO05D000943 1.5e-07 60.8 144 32.6
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 2.0e-07 60.5 129 30.2
Thhalv10020232m.g Eutrema salsugineum HOM05D000956 ORTHO05D001930 2.0e-07 60.5 100 38.0
Nitab4.5_0001568g0080 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.0e-07 60.5 145 32.4
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.0e-07 60.5 108 33.3
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 2.6e-07 60.1 160 28.8
THA.LOC104806014 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 2.6e-07 60.1 86 33.7
A06p02130 Brassica napus HOM05D000956 ORTHO05D014114 3.4e-07 59.7 97 37.1
Ca_05614_v3 Cicer arietinum L. HOM05D000862 ORTHO05D000003 3.4e-07 59.7 144 32.6
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.4e-07 59.7 139 31.7
VMungo0540G1698 Vigna mungo HOM05D000862 ORTHO05D000943 3.4e-07 59.7 144 33.3
BraA06t23424Z Brassica rapa HOM05D000956 ORTHO05D014114 4.4e-07 59.3 97 37.1
Eucgr.F03098 Eucalyptus grandis HOM05D000862 ORTHO05D000943 4.4e-07 59.3 144 32.6
Medtr3g464370 Medicago truncatula HOM05D000862 ORTHO05D000943 4.4e-07 59.3 144 32.6
Dinv39464 Davidia involucrata HOM05D000862 ORTHO05D000943 5.8e-07 58.9 144 34.0
Medtr5g071200 Medicago truncatula HOM05D000862 ORTHO05D000943 5.8e-07 58.9 144 32.6
TWI56G0138 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 5.8e-07 58.9 122 36.1
ATR0665G023 Amborella trichopoda HOM05D000862 ORTHO05D000943 7.6e-07 58.5 190 31.6
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 7.6e-07 58.5 92 42.4
BcaC08g43358 Brassica carinata HOM05D000956 ORTHO05D014114 7.6e-07 58.5 97 37.1
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 7.6e-07 58.5 92 42.4
C06p07220 Brassica napus HOM05D000956 ORTHO05D014114 7.6e-07 58.5 97 37.1
BolC5t33737H Brassica oleracea HOM05D000956 ORTHO05D001930 7.6e-07 58.5 101 35.6
BolC6t35814H Brassica oleracea HOM05D000956 ORTHO05D014114 7.6e-07 58.5 97 37.1
Lsat_1_v5_gn_6_16781 Lactuca sativa HOM05D000862 ORTHO05D003588 7.6e-07 58.5 138 30.4
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 7.6e-07 58.5 152 28.3
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 9.9e-07 58.2 158 30.4
Sabra02G0024300 Salix brachista HOM05D000862 ORTHO05D000943 9.9e-07 58.2 145 33.1
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 9.9e-07 58.2 172 29.7
TPR.G34586 Trifolium pratense HOM05D000862 ORTHO05D000943 9.9e-07 58.2 144 32.6
MD15G1021200 Malus domestica HOM05D000862 ORTHO05D000943 1.3e-06 57.8 160 30.6
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.3e-06 57.8 138 30.4
BcaB06g25751 Brassica carinata HOM05D001329 ORTHO05D002618 1.7e-06 57.4 102 37.3
CARHR066010 Cardamine hirsuta HOM05D000862 ORTHO05D000943 1.7e-06 57.4 148 31.8
COL.COLO4_26231 Corchorus olitorius HOM05D000862 ORTHO05D000943 1.7e-06 57.4 147 32.0
LjContig00155g0010021 Lotus japonicus HOM05D000862 ORTHO05D000943 1.7e-06 57.4 144 31.2
Sp5g28000 Schrenkiella parvula HOM05D000862 ORTHO05D000943 1.7e-06 57.4 148 31.1
DCAR_024495 Daucus carota HOM05D000075 ORTHO05D003588 2.2e-06 57.0 165 27.9
Eucgr.F01603 Eucalyptus grandis HOM05D000862 ORTHO05D000943 2.2e-06 57.0 146 32.9
Phvul.006G068800 Phaseolus vulgaris HOM05D000862 ORTHO05D000943 2.2e-06 57.0 144 32.6
THA.LOC104805929 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 2.2e-06 57.0 94 31.9
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.2e-06 57.0 156 31.4
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 2.9e-06 56.6 143 32.9
Nitab4.5_0000029g0100 Nicotiana tabacum HOM05D000862 ORTHO05D000943 2.9e-06 56.6 181 28.2
Potri.002G030400 Populus trichocarpa HOM05D000862 ORTHO05D000943 2.9e-06 56.6 145 32.4
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 2.9e-06 56.6 141 31.2
AT1G73040 Arabidopsis thaliana HOM05D000862 ORTHO05D000943 3.8e-06 56.2 147 32.0
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.8e-06 56.2 175 29.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.8e-06 56.2 175 29.1
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.8e-06 56.2 156 31.4
Cpa.g.c31450.2 Carica papaya HOM05D000862 ORTHO05D000943 4.9e-06 55.8 122 32.8
Eucgr.F01690 Eucalyptus grandis HOM05D000862 ORTHO05D000943 4.9e-06 55.8 158 31.0
Eucgr.I02556 Eucalyptus grandis HOM05D000862 ORTHO05D000943 4.9e-06 55.8 119 39.5
Manes.05G154000 Manihot esculenta HOM05D000862 ORTHO05D000943 4.9e-06 55.8 157 29.9
BolC2t09101H Brassica oleracea HOM05D000862 ORTHO05D000943 6.4e-06 55.5 147 31.3
Dinv15175 Davidia involucrata HOM05D000862 ORTHO05D003588 6.4e-06 55.5 128 32.0
Solyc01g006240.3 Solanum lycopersicum HOM05D000862 ORTHO05D003588 6.4e-06 55.5 155 27.7
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 8.4e-06 55.1 153 29.4
CAN.G140.49 Capsicum annuum HOM05D000862 ORTHO05D003588 8.4e-06 55.1 155 28.4
CAN.G960.44 Capsicum annuum HOM05D000862 ORTHO05D000943 8.4e-06 55.1 141 31.2
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 8.4e-06 55.1 126 31.7


User provided reference genes

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