Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 1.7e-96 355.9 174 100.0
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 2.5e-95 352.1 174 98.9
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.1e-61 240.4 171 70.8
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-57 226.9 203 63.1
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 2.3e-56 222.6 203 62.1
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 1.1e-55 220.3 173 69.4
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 3.9e-48 195.3 173 60.7
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 6.1e-41 171.4 178 56.2
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 1.8e-40 169.9 170 55.9
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 4.0e-40 168.7 170 55.9
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 4.0e-40 168.7 171 56.1
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 4.4e-39 165.2 170 55.3
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 5.7e-39 164.9 169 55.0
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 5.7e-39 164.9 170 54.7
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 5.3e-37 158.3 173 52.6
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 5.3e-37 158.3 173 52.6
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 9.1e-37 157.5 173 52.0
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 9.1e-37 157.5 167 52.7
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 2.7e-36 156.0 172 51.2
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 1.0e-35 154.1 172 51.2
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 3.8e-35 152.1 205 46.8
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 5.5e-34 148.3 164 53.0
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 2.7e-33 146.0 169 49.7
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 3.4e-31 139.0 178 51.1
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 1.1e-29 134.0 133 54.1
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 1.4e-29 133.7 133 53.4
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 4.1e-29 132.1 148 53.4
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 9.1e-29 131.0 145 51.0
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 2.7e-28 129.4 148 52.7
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 3.5e-28 129.0 141 53.2
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 3.5e-28 129.0 117 59.0
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 3.5e-28 129.0 117 59.0
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.3e-27 126.3 153 50.3
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.5e-23 113.6 120 54.2
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.7e-22 110.2 198 41.4
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 8.3e-22 107.8 148 43.9
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 1.8e-21 106.7 145 47.6
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 3.1e-21 105.9 147 47.6
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 7.0e-21 104.8 146 45.2
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 1.6e-20 103.6 149 46.3
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 1.6e-20 103.6 135 48.9
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 1.0e-19 100.9 142 46.5
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 4.3e-18 95.5 77 62.3
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.6e-17 93.6 135 39.3
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 2.8e-17 92.8 133 37.6
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 3.6e-17 92.4 136 37.5
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 4.7e-17 92.0 120 50.8
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 4.7e-17 92.0 120 50.8
AT2G43745 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.3e-16 89.7 92 54.3
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 3.0e-16 89.4 133 42.1
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 4.0e-16 89.0 122 44.3
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.8e-16 88.2 138 37.0
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 8.9e-16 87.8 114 45.6
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-15 87.4 135 43.0
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 1.2e-15 87.4 135 43.0
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.2e-15 87.4 146 42.5
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 1.5e-15 87.0 141 39.0
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 2.6e-15 86.3 146 41.8
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 5.8e-15 85.1 135 42.2
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 1.7e-14 83.6 135 34.8
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 2.9e-14 82.8 142 33.8
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 3.7e-14 82.4 140 37.9
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.9e-14 82.0 136 35.3
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 6.4e-14 81.6 140 40.0
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 8.3e-14 81.3 142 38.0
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.1e-13 80.9 146 34.9
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.1e-13 80.9 137 36.5
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.2e-13 79.3 154 33.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.2e-13 79.3 154 33.1
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 3.2e-13 79.3 136 36.0
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.1e-13 79.0 134 37.3
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 5.4e-13 78.6 146 36.3
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 5.4e-13 78.6 140 36.4
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 5.4e-13 78.6 140 36.4
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 7.0e-13 78.2 133 39.1
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 9.2e-13 77.8 136 34.6
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 9.2e-13 77.8 125 40.0
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 1.6e-12 77.0 94 46.8
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.6e-12 77.0 139 37.4
CARHR099610 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.6e-12 77.0 84 51.2
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 2.7e-12 76.3 143 34.3
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 2.7e-12 76.3 136 38.2
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 7.8e-12 74.7 165 35.2
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 7.8e-12 74.7 165 35.2
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 7.8e-12 74.7 136 38.2
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 7.8e-12 74.7 118 39.0
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.8e-12 74.7 125 39.2
Oeu019974.1 Olea europaea HOM05D000862 ORTHO05D003588 1.0e-11 74.3 138 36.2
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.0e-11 74.3 139 39.6
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.7e-11 73.6 136 38.2
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.7e-11 73.6 145 35.9
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.3e-11 73.2 142 31.0
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.0e-11 72.8 137 35.0
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.0e-11 72.8 142 36.6
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 6.6e-11 71.6 142 33.1
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 6.6e-11 71.6 130 34.6
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 8.6e-11 71.2 142 33.1
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 1.5e-10 70.5 94 46.8
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 1.5e-10 70.5 138 33.3
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 2.5e-10 69.7 138 34.1
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 3.3e-10 69.3 136 33.8
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 7.3e-10 68.2 147 31.3
THA.LOC104800921 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 7.3e-10 68.2 165 33.3
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 9.5e-10 67.8 129 33.3
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 1.2e-09 67.4 129 32.6
Solyc09g083020.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 1.2e-09 67.4 132 33.3
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.6e-09 67.0 142 31.7
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 2.8e-09 66.2 157 33.8
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 1.8e-08 63.5 132 31.8
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 2.3e-08 63.2 119 38.7
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 2.3e-08 63.2 129 32.6
ECA233G4346 Erigeron canadensis HOM05D000862 ORTHO05D003588 2.3e-08 63.2 155 32.3
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.3e-08 63.2 128 37.5
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 3.1e-08 62.8 139 29.5
Sopen01g002240 Solanum pennellii HOM05D000862 ORTHO05D003588 3.1e-08 62.8 134 29.9
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 4.0e-08 62.4 134 32.8
Solyc01g006240.3 Solanum lycopersicum HOM05D000862 ORTHO05D003588 4.0e-08 62.4 130 29.2
DCAR_026995 Daucus carota HOM05D000862 ORTHO05D003588 5.2e-08 62.0 147 36.1
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 6.8e-08 61.6 85 43.5
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 6.8e-08 61.6 141 32.6
TAR636G2022 Trochodendron aralioides HOM05D000862 ORTHO05D003588 6.8e-08 61.6 128 35.2
Nitab4.5_0001787g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 8.9e-08 61.2 85 40.0
Dinv15175 Davidia involucrata HOM05D000862 ORTHO05D003588 1.5e-07 60.5 130 33.8
PGR119G2194 Punica granatum HOM05D000862 ORTHO05D000943 1.5e-07 60.5 128 35.9
PGSC0003DMG400040105 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.5e-07 60.5 139 32.4
C05p04080 Brassica napus HOM05D008029 ORTHO05D003588 2.6e-07 59.7 119 39.5
Nn7g36896 Nelumbo nucifera HOM05D008029 ORTHO05D003588 2.6e-07 59.7 81 39.5
Os10g0132300 Oryza sativa ssp. japonica HOM05D000862 ORTHO05D049672 4.4e-07 58.9 126 29.4
PGR119G1341 Punica granatum HOM05D000862 ORTHO05D000943 4.4e-07 58.9 128 35.2
PGR119G1637 Punica granatum HOM05D000862 ORTHO05D000943 4.4e-07 58.9 121 35.5
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 5.8e-07 58.5 85 42.4
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 5.8e-07 58.5 85 42.4
CAN.G749.21 Capsicum annuum HOM05D000862 ORTHO05D003588 5.8e-07 58.5 139 32.4
Lsat_1_v5_gn_6_16781 Lactuca sativa HOM05D000862 ORTHO05D003588 5.8e-07 58.5 131 29.8
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 7.5e-07 58.2 149 32.2
vmacro08049 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 7.5e-07 58.2 184 26.6
Dinv15178 Davidia involucrata HOM05D000862 ORTHO05D003588 9.8e-07 57.8 125 34.4
Peaxi162Scf00200g00051 Petunia axillaris HOM05D000862 ORTHO05D003588 9.8e-07 57.8 89 38.2
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 1.7e-06 57.0 177 31.1
Thhalv10001737m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.2e-06 56.6 110 36.4
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.7e-06 55.8 131 32.8
Eucgr.F01690 Eucalyptus grandis HOM05D000862 ORTHO05D000943 8.3e-06 54.7 132 31.8
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 8.3e-06 54.7 134 31.3
THA.LOC104801543 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 8.3e-06 54.7 133 30.8


User provided reference genes

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