Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-55 219.5 125 100.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 7.0e-55 217.2 124 95.2
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 7.0e-55 217.2 124 99.2
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-54 215.7 124 94.4
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-53 213.0 125 92.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.2e-52 208.0 118 94.9
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.7e-51 205.3 122 92.6
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 8.0e-51 203.8 121 92.6
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 8.0e-51 203.8 121 92.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-50 203.0 122 91.8
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-50 203.0 122 91.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 4.0e-50 201.4 121 91.7
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 4.0e-50 201.4 121 91.7
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 6.7e-50 200.7 122 90.2
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 8.8e-50 200.3 119 89.9
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 2.0e-49 199.1 121 90.1
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 4.4e-49 198.0 122 89.3
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 7.5e-49 197.2 119 88.2
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.3e-48 196.4 119 88.2
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.2e-48 195.7 118 89.8
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-46 189.5 122 85.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.7e-45 186.0 119 88.2
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.7e-43 177.9 107 84.1
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.7e-43 177.9 107 84.1
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 6.1e-43 177.6 107 84.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.1e-43 177.6 106 84.9
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 8.0e-43 177.2 122 77.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 8.0e-43 177.2 119 79.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.0e-42 176.8 119 79.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.2e-42 174.5 107 82.2
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 6.8e-42 174.1 106 84.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 8.8e-42 173.7 119 77.3
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 8.8e-42 173.7 119 77.3
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 8.8e-42 173.7 122 77.9
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.2e-41 173.3 106 84.0
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.5e-41 172.9 106 84.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.0e-41 172.6 105 84.8
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.6e-41 172.2 122 74.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 3.4e-41 171.8 119 76.5
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 4.4e-41 171.4 119 81.5
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.4e-41 171.4 119 77.3
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 7.5e-41 170.6 119 76.5
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 9.8e-41 170.2 119 75.6
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 9.8e-41 170.2 107 79.4
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 9.8e-41 170.2 106 83.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.3e-40 169.9 118 74.6
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.3e-40 169.9 105 88.6
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.7e-40 169.5 106 82.1
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.7e-40 169.5 107 79.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-40 167.9 119 73.9
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 4.8e-40 167.9 106 78.3
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 6.3e-40 167.5 119 73.9
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 8.3e-40 167.2 107 79.4
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-39 166.4 119 73.9
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.4e-39 165.6 106 80.2
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.1e-39 165.2 104 82.7
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.1e-39 165.2 106 80.2
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.1e-39 164.9 118 72.9
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.1e-39 164.9 106 80.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.1e-39 164.9 106 80.2
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 5.4e-39 164.5 106 80.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 5.4e-39 164.5 107 78.5
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 7.0e-39 164.1 106 79.2
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 2.0e-38 162.5 121 71.1
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.7e-38 162.2 106 76.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.5e-38 161.8 107 76.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 3.5e-38 161.8 107 76.6
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 4.5e-38 161.4 101 81.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 5.9e-38 161.0 122 68.9
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-37 160.2 125 68.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-37 160.2 125 68.0
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 1.3e-37 159.8 107 76.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.7e-37 159.5 107 74.8
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.3e-37 159.1 101 79.2
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.3e-37 159.1 104 77.9
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.3e-37 159.1 106 73.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.9e-37 158.7 100 80.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.9e-37 158.7 100 80.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.9e-37 158.7 100 80.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.9e-37 158.7 100 80.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.0e-37 157.9 106 76.4
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.1e-36 156.8 128 70.3
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.1e-36 156.8 100 79.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 4.2e-36 154.8 106 72.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 4.2e-36 154.8 106 72.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 7.2e-36 154.1 100 78.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.1e-35 152.5 117 68.4
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.8e-35 152.1 117 67.5
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.6e-35 151.8 98 74.5
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.6e-35 151.8 106 73.6
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 4.7e-35 151.4 107 71.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 6.1e-35 151.0 100 73.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.0e-35 150.6 123 65.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.0e-34 150.2 107 70.1
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.8e-34 149.4 125 66.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.3e-34 149.1 121 64.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.0e-34 148.7 107 70.1
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.0e-34 148.7 106 71.7
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 4.0e-34 148.3 106 68.9
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 6.8e-34 147.5 103 69.9
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.5e-33 146.4 122 63.1
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.5e-33 146.4 122 63.1
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.5e-33 146.4 122 63.1
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.4e-33 145.2 106 65.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-33 144.8 122 63.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-33 144.8 122 63.1
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 5.7e-33 144.4 104 74.0
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 9.8e-33 143.7 102 71.6
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.3e-32 143.3 121 63.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 2.2e-32 142.5 90 90.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 2.2e-32 142.5 90 90.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 2.2e-32 142.5 107 67.3
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.8e-32 142.1 122 60.7
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 6.3e-32 141.0 98 69.4
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 6.3e-32 141.0 92 76.1
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 8.3e-32 140.6 124 59.7
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.8e-31 139.4 110 67.3
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.4e-31 139.0 119 58.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 9.2e-31 137.1 96 71.9
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.0e-30 136.0 91 76.9
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.7e-30 135.6 124 57.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-29 133.7 85 77.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.6e-27 126.3 91 72.5
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.1e-27 125.9 103 63.1
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 4.0e-26 121.7 107 61.7
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.2e-25 120.2 111 55.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-24 115.5 87 71.3
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.1e-23 113.6 74 77.0
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.5e-20 102.4 67 77.6
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.3e-20 101.7 100 52.0
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 2.8e-19 99.0 68 70.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 6.2e-19 97.8 102 53.9
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 8.0e-19 97.4 69 71.0
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 8.0e-19 97.4 57 86.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 3.1e-18 95.5 64 65.6
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 2.6e-17 92.4 70 65.7
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.3e-16 90.1 106 55.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-15 85.5 74 60.8
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-14 83.6 56 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 4.6e-14 81.6 96 52.1
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 7.8e-14 80.9 73 58.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-13 80.1 85 54.1
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.1e-13 78.2 85 54.1
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 8.6e-13 77.4 103 45.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 6.2e-11 71.2 112 42.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-09 65.1 82 48.8
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 7.5e-09 64.3 120 35.0
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 2.2e-08 62.8 38 81.6
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 4.9e-08 61.6 59 50.8
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 6.4e-08 61.2 35 85.7
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 8.3e-08 60.8 53 58.5
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.1e-07 60.5 52 59.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.4e-07 60.1 53 54.7
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 3.2e-07 58.9 59 50.8


User provided reference genes

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