Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24150 Brassica napus HOM05D003515 ORTHO05D004347 2.2e-48 195.3 98 100.0
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 1.2e-09 66.6 56 62.5
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 1.2e-09 66.6 56 62.5
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 1.2e-09 66.6 56 62.5
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.2e-09 66.6 56 62.5
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.2e-09 66.6 56 62.5
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 1.2e-09 66.6 56 62.5
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 1.6e-09 66.2 56 60.7
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 1.6e-09 66.2 56 60.7
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 2.0e-09 65.9 56 62.5
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 2.7e-09 65.5 56 60.7
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 4.5e-09 64.7 75 50.7
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 1.3e-08 63.2 56 60.7
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 1.3e-08 63.2 56 57.1
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 1.7e-08 62.8 56 57.1
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 2.2e-08 62.4 56 55.4
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 2.9e-08 62.0 56 57.1
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 2.9e-08 62.0 56 57.1
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.9e-08 62.0 56 57.1
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 2.9e-08 62.0 56 57.1
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 3.8e-08 61.6 57 54.4
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 3.8e-08 61.6 56 55.4
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 3.8e-08 61.6 56 55.4
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 3.8e-08 61.6 56 55.4
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 3.8e-08 61.6 75 48.0
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 3.8e-08 61.6 56 55.4
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 3.8e-08 61.6 56 55.4
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 3.8e-08 61.6 57 54.4
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 5.0e-08 61.2 56 55.4
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 5.0e-08 61.2 56 57.1
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 6.5e-08 60.8 56 53.6
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 6.5e-08 60.8 56 55.4
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 6.5e-08 60.8 76 46.1
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 8.5e-08 60.5 64 50.0
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 8.5e-08 60.5 56 53.6
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 8.5e-08 60.5 56 53.6
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 8.5e-08 60.5 56 53.6
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 8.5e-08 60.5 56 53.6
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 1.1e-07 60.1 75 46.7
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.1e-07 60.1 56 53.6
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.1e-07 60.1 56 53.6
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.1e-07 60.1 56 53.6
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 1.1e-07 60.1 56 55.4
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 1.5e-07 59.7 76 47.4
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 1.5e-07 59.7 56 53.6
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 1.5e-07 59.7 56 53.6
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 1.5e-07 59.7 56 55.4
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.5e-07 59.7 56 53.6
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 1.9e-07 59.3 56 53.6
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.9e-07 59.3 56 53.6
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 1.9e-07 59.3 75 46.7
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 1.9e-07 59.3 75 46.7
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 1.9e-07 59.3 56 53.6
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.9e-07 59.3 56 53.6
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 2.5e-07 58.9 58 51.7
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 3.2e-07 58.5 56 53.6
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 3.2e-07 58.5 56 53.6
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 3.2e-07 58.5 56 53.6
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 3.2e-07 58.5 75 45.3
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 4.2e-07 58.2 56 53.6
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 4.2e-07 58.2 56 51.8
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 5.5e-07 57.8 75 44.0
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 5.5e-07 57.8 57 50.9
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 5.5e-07 57.8 56 51.8
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 5.5e-07 57.8 56 51.8
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 5.5e-07 57.8 56 51.8
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 7.2e-07 57.4 56 51.8
Phvul.007G100966 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 7.2e-07 57.4 56 55.4
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 7.2e-07 57.4 56 51.8
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 9.4e-07 57.0 56 48.2
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 9.4e-07 57.0 56 51.8
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 9.4e-07 57.0 75 45.3
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 9.4e-07 57.0 56 50.0
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 9.4e-07 57.0 56 51.8
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 9.4e-07 57.0 56 51.8
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 1.2e-06 56.6 56 51.8
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 1.2e-06 56.6 56 50.0
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 1.2e-06 56.6 56 50.0
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 1.2e-06 56.6 56 50.0
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 1.2e-06 56.6 56 50.0
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 1.6e-06 56.2 56 51.8
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.6e-06 56.2 56 50.0
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.6e-06 56.2 56 50.0
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 2.1e-06 55.8 56 51.8
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 2.1e-06 55.8 56 50.0
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 2.1e-06 55.8 75 42.7
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 2.1e-06 55.8 56 50.0
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 2.1e-06 55.8 56 50.0
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 2.1e-06 55.8 56 50.0
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 2.7e-06 55.5 71 45.1
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 2.7e-06 55.5 56 50.0
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 3.6e-06 55.1 56 50.0
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 4.7e-06 54.7 56 50.0
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 4.7e-06 54.7 49 57.1
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 8.0e-06 53.9 56 46.4
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 8.0e-06 53.9 71 43.7


User provided reference genes

Program Settings